P0D

java.lang.Object
- cern.colt.PersistentObject
- - cern.colt.list.AbstractCollection
  - - cern.colt.list.AbstractList
    - - cern.colt.list.AbstractDoubleList
      - cern.colt.list.DoubleArrayList
        
        jhplot.P0D

All Implemented Interfaces:

cern.colt.buffer.DoubleBufferConsumer, Serializable, Cloneable
```
public class P0D
extends cern.colt.list.DoubleArrayList
implements Serializable
```
A container to hold data points in one dimension. All numbers are expected to be in double precision. It extends ArrayList and adds many new features for data manipulation. The class does not have graphical option (use H1D to show the data or methods of this class which transform P0D to a H1D histogram).
This is a high-speed a small footprint container designed for numerical analysis.

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description
`P0D()` Construct an empty container with a title
`P0D(double[] d)` Construct P0D from array;
`P0D(String title)` Construct an empty container with a title
`P0D(String title, double[] d)` Create P0D from an array.
`P0D(String title, P0D p0d)` Construct a copy from a P0D.
`P0D(String title, String sfile)` Construct a P0D from a file.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`containsAll(double[] array)` Tests the collection to determine if all of the elements in array are present.
`P0D`	`copy()` Get a copy of the current holder
`P0D`	`copy(String newtitle)` Create an exact copy of the current P0D.
`double`	`correlation(P0D p0d)` Returns the correlation coefficient.
`double`	`covariance(P0D p0d)` Returns the covariance
`void`	`doc()` Show online documentation.
`void`	`fill(double[] values)` Fill a P0D container from an array.
`void`	`fill(int[] values)` Fill a P0D container from an array.
`void`	`fill(int TotNumber, double min, double max)` Fill with a sequence of numbers between min and max.
`int`	`find(double d)` Returns the index of first occurrence of the specified element
`P0D`	`func(F1D f1d)` Transform P0D array to array with values given by a function.
`P0D`	`func(String title, F1D f1d)` Make transformation of P0D using a function.
`P0D`	`get(int d, String opi)` Get P0D with values below, above or equal a specified value.
`double[]`	`getArray()` Get a double array with P0D values.
`int[]`	`getArrayInt()` Get an integer array with P0D values.
`ArrayList<Double>`	`getArrayList()` Get data in form of ArrayList
`H1D`	`getH1D(int bins)` Return H1D histogram with P0D content.
`H1D`	`getH1D(int bins, double min, double max)` Return H1D histogram with P0D content.
`double`	`getMax()` Returns the maximum value.
`int`	`getMaxIndex()` Returns index corresponding to maximum value.
`double`	`getMin()` Returns the minimum value.
`int`	`getMinIndex()` Returns index corresponding to minimum value.
`Map<String,Double>`	`getStat()` Get complete statistics for this container.
`String`	`getStatString()` Returns a string representing statistics.
`String`	`getStringValues()` Return all values as a string.
`double`	`getSum()` Sum all ellements of this array.
`String`	`getTitle()` Get a new title
`int`	`hashCode()` Returns the hash code value for this collection.
`double`	`kurtosis()` Returns the kurtosis.
`int`	`lastIndexOf(int offset, int value)` Searches the list back to front for the last index of value, starting at offset.
`double`	`mean()` Returns the mean value.
`double`	`median()` Returns the median.
`P0D`	`merge(P0D a)` Merge two P0D containers
`double`	`moment(int k, double c)` Returns the moment of k-th order with value c, which is Sum( (x[i]-c)k ) / size().
`P0D`	`oper(P0D p0d, String what)` Operations on P0D containers: add, subtract, multiply, divide.
`P0D`	`oper(P0D p0d, String title, String what)` Operations on P0D containers: add, subtract, multiply, divide.
`P0D`	`operScale(double scale)` Scale P0D with a factor scale.
`P0D`	`operShift(double shift)` Shift all values in the array by a constant.
`P0D`	`operShiftAndScale(double shift, double scale)` Shift all values by a constant "shift", then scale it.
`void`	`print()` Print a P0D container.
`void`	`random(int TotNumber, cern.jet.random.AbstractDistribution dist)` Fill array with random numbers Random generators are taken from cern.jet.random.*.
`void`	`randomNormal(int TotNumber, double mu, double sigma)` Fill with random numbers distributed using the normal (gaussian) distribution.
`void`	`randomUniform(int TotNumber, double min, double max)` Fill with with uniform random numbers between min and max.
`P0D`	`range(int min, int max)` Get range between min and max
`int`	`read(BufferedReader br)` Read one dimensional data from uncompressed ASCII file.
`int`	`read(File sfile)` Read P0D from a file.
`int`	`read(String sfile)` Read PNI from a file.
`int`	`read(URL url)` Read data from URL.
`int`	`readBinary(String name)` Read a P0D from a binary file (big endian by default).
`int`	`readGZip(File sfile)` Read PNI from a GZiped file.
`int`	`readGZip(String sfile)` Read P0D from a GZiped file.
`P0D`	`readSerialized(String name)` Read a P0D object from a serialized file
`int`	`readZip(String sfile)` Read one dimensional data from ZIP ASCII file.
`void`	`removeAll(int min, int max)` Remove elements
`int`	`search(double value)` Search for the first occurrence of the given argument
`void`	`setArray(double[] array)` Set a double array.
`void`	`setArray(int[] array)` Set an integer array.
`void`	`setArrayList(ArrayList<Double> array)` Set the data in form of ArrayList
`void`	`setTitle(String title)` Set a new title
`double`	`skew()` Returns the skew, which is moment(3,mean()) / standardDeviation() Run getStat(0 for evaluation
`void`	`sort(int fromIndex, int toIndex)` Sort a slice of the list (ascending) using the Sun quicksort implementation.
`int[]`	`sortIndex()` Return indexes of sorted array in increasing order.
`double`	`standardError()` Returns the sample standard error, which is Math.sqrt(variance() / size()).
`double`	`stddeviation()` Returns the standard deviation (square root of variance)
`void`	`toFile(String name)` Write a P0D to an external file.
`String`	`toString()` Get a P0D as a string.
`void`	`toTable()` Print the P0D container to a Table in a separate Frame.
`double`	`variance()` Returns the variance.
`void`	`writeBinary(String name)` Write a P0D to a binary file (big endian by default).
`int`	`writeSerialized(String name)` Write a P0D object to a serialized file

Methods inherited from class cern.colt.list.DoubleArrayList
add, beforeInsert, binarySearchFromTo, clone, elements, elements, ensureCapacity, equals, fillRandom, forEach, get, getQuick, indexOfFromTo, lastIndexOfFromTo, partFromTo, removeAll, replaceFromToWithFrom, retainAll, reverse, set, setQuick, shuffleFromTo, trimToSize

Methods inherited from class cern.colt.list.AbstractDoubleList
addAllOf, addAllOfFromTo, beforeInsertAllOfFromTo, binarySearch, contains, delete, fillFromToWith, indexOf, lastIndexOf, mergeSortFromTo, mergeSortFromTo, quickSortFromTo, quickSortFromTo, removeFromTo, replaceFromToWithFromTo, replaceFromWith, size, times, toList

Methods inherited from class cern.colt.list.AbstractList
addAllOf, beforeInsertAllOf, clear, mergeSort, quickSort, remove, setSize, shuffle, sort, sortFromTo

Methods inherited from class cern.colt.list.AbstractCollection
isEmpty

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - P0D
```
public P0D(String title)
```
    Construct an empty container with a title
    
    Parameters:
    
    title - New title
  - P0D
```
public P0D(double[] d)
```
    Construct P0D from array;
    
    Parameters:
    
    d - array
  - P0D
```
public P0D(String title,
           double[] d)
```
    Create P0D from an array.
    
    Parameters:
    
    title - title
    
    d - input array
  - P0D
```
public P0D(String title,
           P0D p0d)
```
    Construct a copy from a P0D. If the last argument is true, a shallow copy of a collection. In this case a new collection contains references to same objects as the source collection. Data are not cloned
    
    Parameters:
    
    title - new title
    
    p0d - input data in form of P0D
  - P0D
```
public P0D()
```
    Construct an empty container with a title
  - P0D
```
public P0D(String title,
           String sfile)
```
    Construct a P0D from a file. Use "#" or "*" for comments. each number should be written in separate line.
    
    Parameters:
    
    title - Title of the container
    
    sfile - File name with input. Can be either file location or URL. Must start as http or ftp
- Method Detail
  - setTitle
```
public void setTitle(String title)
```
    Set a new title
    
    Parameters:
    
    title - New Title
  - getTitle
```
public String getTitle()
```
    Get a new title
    
    Returns:
    
    Title
  - read
```
public int read(BufferedReader br)
```
    Read one dimensional data from uncompressed ASCII file. Use "#" or "*" for comments. Each number should be written on a separate line.
    
    Parameters:
    
    sfile - File name with input
    
    Returns:
    
    error: 0 in case of success. 3: parse error. 1-2: file not found.
  - read
```
public int read(File sfile)
```
    Read P0D from a file. The old content will be lost. Comment lines starting with "#" and "*" are ignored.
    
    Parameters:
    
    sfile - input file
    
    Returns:
    
    zero if success
  - read
```
public int read(URL url)
```
    Read data from URL. Use a space to separate values in columns and tab to put new row.
    
    Parameters:
    
    url - URL location of input file
  - readGZip
```
public int readGZip(String sfile)
```
    Read P0D from a GZiped file. It can read URL if the string starts from http or ftp, otherwise a file on the file system is assumed.
    Use a space to separate values in columns and tab to put new row.
    
    Parameters:
    
    sfile - File name with input (extension .gz)
    
    Returns:
    
    zero if success
  - read
```
public int read(String sfile)
```
    Read PNI from a file. It can read URL if the string starts from http or ftp, otherwise a file on the file system is assumed.
    The old content will be lost. Use a space to separate values in columns and tab to put new row. Comment lines starting with "#" and "*" are ignored.
    
    Parameters:
    
    sfile - File name with input
    
    Returns:
    
    zero if success
  - readGZip
```
public int readGZip(File sfile)
```
    Read PNI from a GZiped file. The old content will be lost. Comment lines start from "#" and "*" are ignored.
    
    Parameters:
    
    sfile - File name with input (extension .gz)
    
    Returns:
    
    zero if success
  - readZip
```
public int readZip(String sfile)
```
    Read one dimensional data from ZIP ASCII file. Use "#" or "*" for comments. Each number should be written in separate line.
    
    Parameters:
    
    sfile - Zipped file name with input (file extension .zip)
    
    Returns:
    
    error (int): 0 in case of success. 3: parse error. 1-2: file not found.
  - toFile
```
public void toFile(String name)
```
    Write a P0D to an external file.
    
    Parameters:
    
    name - File name with output
  - writeBinary
```
public void writeBinary(String name)
```
    Write a P0D to a binary file (big endian by default).
    
    Parameters:
    
    name - Binary file name for the output.
  - writeSerialized
```
public int writeSerialized(String name)
```
    Write a P0D object to a serialized file
    
    Parameters:
    
    name - serialized file name for output.
    
    Returns:
    
    zero if no errors
  - readSerialized
```
public P0D readSerialized(String name)
```
    Read a P0D object from a serialized file
    
    Parameters:
    
    name - serialized file name for input.
    
    Returns:
    
    new P0D object
  - readBinary
```
public int readBinary(String name)
```
    Read a P0D from a binary file (big endian by default). Old elements will be removed. Only read files created by the method writeBinary().
    
    Parameters:
    
    name - Binary file name for input.
    
    Returns:
    
    0 in case of no problems
  - toString
```
public String toString()
```
    Get a P0D as a string.
    
    Overrides:
    
    toString in class cern.colt.list.AbstractDoubleList
    
    Returns:
    
    Output String. Each value separated by new line.
  - randomNormal
```
public void randomNormal(int TotNumber,
                         double mu,
                         double sigma)
```
    Fill with random numbers distributed using the normal (gaussian) distribution. Previous content will be lost.
    
    Parameters:
    
    TotNumber - total number of random values
    
    mu - mean value
    
    sigma - Standard deviation of the random variable.
  - fill
```
public void fill(int TotNumber,
                 double min,
                 double max)
```
    Fill with a sequence of numbers between min and max. min and max are included to the range, If non-empty, previous content will be lost.
    The step is evaluated as (max-min) / (TotNumber -1). For example, fill(11,0,10) will fill with 11 number: 0,1,2,3,4,5,6,7,8,9,10
    
    Parameters:
    
    TotNumber - total number of values.
    
    min - min value
    
    max - max value
  - randomUniform
```
public void randomUniform(int TotNumber,
                          double min,
                          double max)
```
    Fill with with uniform random numbers between min and max. Previous content will be lost.
    
    Parameters:
    
    TotNumber - of random values
    
    min - min random value
    
    max - max random value
  - random
```
public void random(int TotNumber,
                   cern.jet.random.AbstractDistribution dist)
```
    Fill array with random numbers Random generators are taken from cern.jet.random.*. Examples: Beta, Binominal, Poisson, BreitWigner,ChiSquare,Empirical Exponential, Gamma, Hyperbolic, Logarithmic, Normal, NegativeBinomial
    
    Parameters:
    
    TotNumber - Total number in array
    
    dist - A custom random distribution from cern.jet.random.*.
  - getH1D
```
public H1D getH1D(int bins)
```
    Return H1D histogram with P0D content. Histogram range is defined by Min and Max values.
    
    Parameters:
    
    bins - Number of bins for the histogram.
    
    Returns:
    
    H2D histogram filled with P0D.
  - getH1D
```
public H1D getH1D(int bins,
                  double min,
                  double max)
```
    Return H1D histogram with P0D content. Histogram range is defined by Min and Max values.
    
    Parameters:
    
    min - Min value of histogram
    
    max - Max value of histogram
    
    bins - Number of bins for the histogram.
    
    Returns:
    
    H2D histogram filled with P0D.
  - print
```
public void print()
```
    Print a P0D container.
  - merge
```
public P0D merge(P0D a)
```
    Merge two P0D containers
    
    Parameters:
    
    a - Container to be merged
    
    Returns:
    
    merged P0D container
  - fill
```
public void fill(double[] values)
```
    Fill a P0D container from an array. If it is not empty, add values will be appended.
    
    Parameters:
    
    values - array with double values
  - fill
```
public void fill(int[] values)
```
    Fill a P0D container from an array. If it is not empty, add values will be appended. Integers will be converted to double.
    
    Parameters:
    
    values - array with double values
  - copy
```
public P0D copy()
```
    Get a copy of the current holder
    
    Overrides:
    
    copy in class cern.colt.list.DoubleArrayList
    
    Returns:
    
    a new copy
  - getArrayList
```
public ArrayList<Double> getArrayList()
```
    Get data in form of ArrayList
    
    Returns:
    
    data in form of ArrayList
  - getStringValues
```
public String getStringValues()
```
    Return all values as a string. Values are separated by space
    
    Returns:
    
    values as a single string
  - sort
```
public void sort(int fromIndex,
                 int toIndex)
```
    Sort a slice of the list (ascending) using the Sun quicksort implementation.
    
    Parameters:
    
    fromIndex -
    
    toIndex -
  - hashCode
```
public int hashCode()
```
    Returns the hash code value for this collection.
    
    Overrides:
    
    hashCode in class Object
  - lastIndexOf
```
public int lastIndexOf(int offset,
                       int value)
```
    Searches the list back to front for the last index of value, starting at offset.
    
    Parameters:
    
    offset -
    
    value -
    
    Returns:
  - containsAll
```
public boolean containsAll(double[] array)
```
    Tests the collection to determine if all of the elements in array are present.
    
    Parameters:
    
    array -
    
    Returns:
    
    true if contains
  - removeAll
```
public void removeAll(int min,
                      int max)
```
    Remove elements
    
    Parameters:
    
    min - min index
    
    max - max index
  - setArrayList
```
public void setArrayList(ArrayList<Double> array)
```
    Set the data in form of ArrayList
    
    Parameters:
    
    array - ArrayList to be set.
  - setArray
```
public void setArray(double[] array)
```
    Set a double array. Old content will be lost.
    
    Parameters:
    
    array - array used to fill P0D
  - setArray
```
public void setArray(int[] array)
```
    Set an integer array. Old content will be lost. It will be automatically transformed to the double.
    
    Parameters:
    
    array - array used to fill P0D
  - copy
```
public P0D copy(String newtitle)
```
    Create an exact copy of the current P0D.
    
    Parameters:
    
    newtitle - new title
  - get
```
public P0D get(int d,
               String opi)
```
    Get P0D with values below, above or equal a specified value. Specify in the input string "<,> or =".
    
    Parameters:
    
    d - input values
    
    opi - if "=", take equal values;
    if ">", take above values;
    if "<", take below values;
  - find
```
public int find(double d)
```
    Returns the index of first occurrence of the specified element
    
    Parameters:
    
    d - input value
  - getArray
```
public double[] getArray()
```
    Get a double array with P0D values.
    
    Returns:
    
    double array with values
  - getArrayInt
```
public int[] getArrayInt()
```
    Get an integer array with P0D values.
    
    Returns:
    
    integer array with values
  - search
```
public int search(double value)
```
    Search for the first occurrence of the given argument
    
    Parameters:
    
    value - value for searching
    
    Returns:
    
    first occurrence of the given argument
  - getMax
```
public double getMax()
```
    Returns the maximum value.
    
    Returns:
    
    the maximum value.
  - getMaxIndex
```
public int getMaxIndex()
```
    Returns index corresponding to maximum value.
    
    Returns:
    
    index of maximum value.
  - getMinIndex
```
public int getMinIndex()
```
    Returns index corresponding to minimum value.
    
    Returns:
    
    index of minimum value.
  - getMin
```
public double getMin()
```
    Returns the minimum value.
    
    Returns:
    
    the minimum value.
  - range
```
public P0D range(int min,
                 int max)
```
    Get range between min and max
    
    Parameters:
    
    min - index
    
    max - index
    
    Returns:
    
    same P0D with removed range
  - oper
```
public P0D oper(P0D p0d,
                String what)
```
    Operations on P0D containers: add, subtract, multiply, divide. Keep the same graphical attributes and the title.
    
    Parameters:
    
    p0d - Input P0D container for operation
    
    what - String representing the operation: "+" add a P0D container to the original; "-" subtract a P0D from the original; "*" multiply; "/" divide by P0D
    
    Returns:
    
    original P0D after the operation.
  - operScale
```
public P0D operScale(double scale)
```
    Scale P0D with a factor scale. X(i)=scale*X(i)
    
    Parameters:
    
    scale - Scale factor
    
    Returns:
    
    P0D after the operation.
  - operShift
```
public P0D operShift(double shift)
```
    Shift all values in the array by a constant. X(i)=X(i)+shift.
    
    Parameters:
    
    shift - constants used to add
    
    Returns:
    
    P0D after shift.
  - operShiftAndScale
```
public P0D operShiftAndScale(double shift,
                             double scale)
```
    Shift all values by a constant "shift", then scale it. X(i)=(X(i)+shift)*scale.
    
    Parameters:
    
    shift - constants used to add to all values
    
    scale - constant used to scale after shifting.
    
    Returns:
    
    P0D after shift and scale.
  - getSum
```
public double getSum()
```
    Sum all ellements of this array.
    
    Returns:
    
    sum of all ellements
  - oper
```
public P0D oper(P0D p0d,
                String title,
                String what)
```
    Operations on P0D containers: add, subtract, multiply, divide. Keep the same graphical attributes
    
    Parameters:
    
    p0d - Input P0D container for operation
    
    title - New title
    
    what - String representing the operation: "+" add a P0D container to the original; "-" subtract a P0D from the original; "*" multiply; "/" divide by P0D
    
    Returns:
    
    original P0D after the operation.
  - mean
```
public double mean()
```
    Returns the mean value.
    
    Returns:
    
    Mean value
  - kurtosis
```
public double kurtosis()
```
    Returns the kurtosis. Run getStat() to update or evaluate the sampling
    
    Returns:
    
    kurtosis
  - median
```
public double median()
```
    Returns the median. First run getStat() to evaluate or update.
    
    Returns:
    
    median
  - getStatString
```
public String getStatString()
```
    Returns a string representing statistics.
    
    Returns:
    
    string representing statistics
  - getStat
```
public Map<String,Double> getStat()
```
    Get complete statistics for this container. It return mean, error on the mean, RMS, variance, standard deviation.
    The key for the output map are: mean, error, rms, variance, stddev . Print the key to find out what is inside.
    
    Returns:
    
    map representing statistical characteristics of this data
  - moment
```
public double moment(int k,
                     double c)
```
    Returns the moment of k-th order with value c, which is Sum( (x[i]-c)k ) / size(). First run getStat() for evaluation
    
    Parameters:
    
    k - k-th order
    
    c - c
    
    Returns:
    
    moment
  - standardError
```
public double standardError()
```
    Returns the sample standard error, which is Math.sqrt(variance() / size()). Run getStat(0) before.
    
    Returns:
    
    sample standard error
  - skew
```
public double skew()
```
    Returns the skew, which is moment(3,mean()) / standardDeviation() Run getStat(0 for evaluation
    
    Returns:
    
    skewness
  - variance
```
public double variance()
```
    Returns the variance. Run getStat() first to update or evaluate
    
    Returns:
    
    variance
  - stddeviation
```
public double stddeviation()
```
    Returns the standard deviation (square root of variance)
    
    Returns:
    
    variance
  - covariance
```
public double covariance(P0D p0d)
```
    Returns the covariance
    
    Parameters:
    
    p0d - P0D object for covariance calculations
    
    Returns:
    
    covariance value
  - correlation
```
public double correlation(P0D p0d)
```
    Returns the correlation coefficient. Values between 0 (no correlation) and 1 (full linear correlation)
    
    Parameters:
    
    p0d - P0D object for correlation calculation.
    
    Returns:
    
    correlation coefficient.
  - func
```
public P0D func(F1D f1d)
```
    Transform P0D array to array with values given by a function. The function may have up to 3 independent variables in it (x,y,z).
    This class is not fool proof. If the answer is wrong then use the parenthesis to force the order of evaluation. The most likely place this will be needed is in the use of the power command. The exponent is not evaluated correctly if it begins with a unary operator.
    List of commands
    - ( ) parenthesis , comma
    - +, -, unary -, unary +
    - , /
    - ^ (raise to a power)
    - pi, e, All the constants in class SpecialFunction
    - log
    - sin, cos, tan
    - asin, acos, atan
    - sqrt
    - rand
    - exp
    - remainder
    - atan2
    - All the functions in class SpecialFunction
    - Independent variables x,y,z
    - Scientific notation using "e", "E", "d", "D".
    Parameters:
    
    f1d - function for transformation
    
    Returns:
    
    transformed P0D
  - func
```
public P0D func(String title,
                F1D f1d)
```
    Make transformation of P0D using a function.
    
    Parameters:
    
    title - new title
    
    f1d - function for transformation
    
    Returns:
    
    transformed P0D
  - sortIndex
```
public int[] sortIndex()
```
    Return indexes of sorted array in increasing order. The array itself will not be changed, since it acts on a clone. Used quicksort stable algorithm.
    
    Returns:
    
    indexes of sorted array.
  - toTable
```
public void toTable()
```
    Print the P0D container to a Table in a separate Frame. The numbers are formatted to scientific format. One can sort and search the data in this table (but not modify)
  - doc
```
public void doc()
```
    Show online documentation.

Class P0D

Constructor Summary

Method Summary

Methods inherited from class cern.colt.list.DoubleArrayList

Methods inherited from class cern.colt.list.AbstractDoubleList

Methods inherited from class cern.colt.list.AbstractList

Methods inherited from class cern.colt.list.AbstractCollection

Methods inherited from class java.lang.Object

Constructor Detail

P0D

P0D

P0D

P0D

P0D

P0D

Method Detail

setTitle

getTitle

read

read

read

readGZip

read

readGZip

readZip

toFile

writeBinary

writeSerialized

readSerialized

readBinary

toString

randomNormal

fill

randomUniform

random

getH1D

getH1D

print

merge

fill

fill

copy

getArrayList

getStringValues

sort

hashCode

lastIndexOf

containsAll

removeAll

setArrayList

setArray

setArray

copy

get

find

getArray

getArrayInt

search

getMax

getMaxIndex

getMinIndex

getMin

range

oper

operScale

operShift

operShiftAndScale

getSum

oper

mean

kurtosis

median

getStatString

getStat

moment

standardError

skew

variance

stddeviation

covariance