org.jdmp.core.dataset

Class AbstractListDataSet

java.lang.Object

java.lang.Number

org.ujmp.core.AbstractMatrix

org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<A>

org.ujmp.core.genericmatrix.stub.AbstractDenseGenericMatrix<A>

org.ujmp.core.genericmatrix.stub.AbstractDenseGenericMatrix2D<E>

org.ujmp.core.listmatrix.AbstractListMatrix<Sample>

org.jdmp.core.dataset.AbstractListDataSet

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Comparable<Matrix>, java.lang.Iterable<Sample>, java.util.Collection<Sample>, java.util.List<Sample>, DataSet, ListDataSet, HasMetaData, BaseMatrix, BooleanCalculations, CanPerformCalculations, DenseMatrix, DenseMatrix2D, DenseMatrixMultiD, BasicDoubleCalculations, DoubleCalculations, BasicEntrywiseDoubleCalculations, CreatorDoubleCalculations, EntrywiseDoubleCalculations, HyperbolicDoubleCalculations, MiscEntrywiseDoubleCalculations, RoundingDoubleCalculations, TrigonometricDoubleCalculations, DecompositionDoubleCalculations, DiscretizeCalculations, GeneralDoubleCalculations, MiscGeneralDoubleCalculations, MissingValueDoubleCalculations, StatisticalDoubleCalculations, BaseGenericMatrix<Sample>, DenseGenericMatrix<Sample>, DenseGenericMatrix2D<Sample>, DenseGenericMatrixMultiD<Sample>, GenericMatrix<Sample>, GenericMatrix2D<Sample>, GenericMatrixMultiD<Sample>, SparseGenericMatrix<Sample>, SparseGenericMatrix2D<Sample>, SparseGenericMatrixMultiD<Sample>, BaseMatrixProperties, Clearable, Conversions, CoordinateFunctions, CoreObject, DistanceMeasures, ExtendedMatrixProperties, GettersAndSetters, HasDescription, HasGUIObject, HasId, HasLabel, IntCalculations, ListMatrix<Sample>, Matrix, Matrix2D, MatrixMultiD, ObjectCalculations, SparseMatrix, SparseMatrix2D, SparseMatrixMultiD, StringCalculations

Direct Known Subclasses:

DefaultListDataSet, MatrixDataSet

public abstract class AbstractListDataSet
extends AbstractListMatrix<Sample>
implements ListDataSet

See Also:

Serialized Form

Field Summary

Fields inherited from interface org.jdmp.core.dataset.ListDataSet

Factory

Fields inherited from interface org.jdmp.core.dataset.DataSet

ACCURACY, CONFUSION, ERRORCOUNT, INPUT, PREDICTED, RMSE, TARGET

Fields inherited from interface org.ujmp.core.Matrix

chol, divideMatrix, divideScalar, eig, inv, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, svd, timesMatrix, timesScalar, transpose

Fields inherited from interface org.ujmp.core.BaseMatrix

ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z

Fields inherited from interface org.ujmp.core.annotation.HasMetaData

DIMENSIONMETADATA

Fields inherited from interface org.ujmp.core.interfaces.HasLabel

LABEL

Fields inherited from interface org.ujmp.core.interfaces.HasDescription

DESCRIPTION

Fields inherited from interface org.ujmp.core.interfaces.HasId

ID

Fields inherited from interface org.ujmp.core.DenseMatrix2D

Factory

Fields inherited from interface org.ujmp.core.SparseMatrix2D

Factory

Constructor Summary

Constructors

Constructor and Description
AbstractListDataSet()

Method Summary

Modifier and Type	Method and Description
void	appendRMSEMatrix(Matrix m)
ListDataSet	bootstrap()
ListDataSet	bootstrap(int numberOfSamples)
abstract ListDataSet	clone()
double	getAccuracy()
double	getAsDouble(java.lang.String key)
int	getClassCount()
Matrix	getClassDistribution()
int	getErrorCount()
int	getFeatureCount()
GUIObject	getGUIObject() Returns an object suitable for displaying on the screen.
Matrix	getInputMatrix()
Matrix	getMatrix(java.lang.Object key)
Matrix	getPredictedMatrix()
double	getRMSE()
Matrix	getRMSEMatrix()
Matrix	getTargetMatrix()
boolean	isDiscrete()
java.util.Set<java.lang.String>	keySet()
void	setMatrix(java.lang.String key, Matrix matrix)
java.util.List<ListDataSet>	splitByClass()
java.util.List<ListDataSet>	splitByCount(boolean shuffle, int... count)
java.util.List<ListDataSet>	splitByPercent(boolean shuffle, double... percent)
java.util.List<ListDataSet>	splitForCV(int numberOfCVSets, int idOfCVSet, long randomSeed)
java.util.List<ListDataSet>	splitForStratifiedCV(int numberOfCVSets, int idOfCVSet, long randomSeed)
java.lang.String	toString()

Methods inherited from class org.ujmp.core.listmatrix.AbstractListMatrix

add, add, addAll, addAll, clear, contains, containsAll, get, getLast, getObject, getSize, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, setObject, size, subList, toArray, toArray

Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractDenseGenericMatrix2D

getDimensionCount, getObject, setObject

Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractDenseGenericMatrix

availableCoordinates, containsCoordinates, isSparse

Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix

getAsObject, getObject, setAsObject, setObject

Methods inherited from class org.ujmp.core.AbstractMatrix

abs, addMissing, allCoordinates, allValues, and, and, append, appendHorizontally, appendVertically, atimes, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, convertEncoding, corrcoef, cos, cosh, cosineSimilarity, cosineSimilarityTo, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diag, diff, discretize, discretize, discretizeToBoolean, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistance, euklideanDistanceTo, exp, exportTo, extractAnnotation, eye, fadeIn, fadeOut, fill, fireValueChanged, fireValueChanged, fireValueChanged, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getColumnCount, getColumnForLabel, getColumnLabel, getColumnList, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDescription, getDimensionLabel, getDimensionMetaData, getEuklideanValue, getFactory, getId, getLabel, getLabelObject, getMaxValue, getMeanValue, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowList, getSize, getStdValue, getValueCount, getValueSum, getValueType, getZCount, ginv, grayScale, gt, gt, importFrom, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, logistic, longValue, lowerCase, lt, lt, lu, manhattenDistance, manhattenDistanceTo, max, mean, min, minkowskiDistance, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mutualInf, nans, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, ones, or, or, pairedTTest, pdet, pinv, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, save, save, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setColumnLabel, setContent, setDescription, setDimensionLabel, setDimensionMetaData, setId, setLabel, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel, setSize, share, share, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, svd, swap, tan, tanh, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toHtml, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toStringArray, toStringMatrix, trace, translate, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros

Methods inherited from class java.lang.Number

byteValue, shortValue

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.jdmp.core.dataset.DataSet

isEmpty, size

Methods inherited from interface org.ujmp.core.listmatrix.ListMatrix

getLast

Methods inherited from interface org.ujmp.core.genericmatrix.GenericMatrix2D

getObject, getObject, setObject, setObject

Methods inherited from interface org.ujmp.core.Matrix

exportTo, fireValueChanged, fireValueChanged, fireValueChanged, importFrom, save, save, share, share, toHtml

Methods inherited from interface org.ujmp.core.BaseMatrix

getFactory

Methods inherited from interface org.ujmp.core.interfaces.BaseMatrixProperties

allValues, equals, equalsAnnotation, equalsContent, getColumnCount, getColumnList, getDimensionCount, getRowCount, getRowList, getSize, getSize, getValueCount, getValueType, getZCount, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSparse, isSquare, isSymmetric, isTransient, setSize

Methods inherited from interface org.ujmp.core.interfaces.CoreObject

getCoreObjectId

Methods inherited from interface org.ujmp.core.interfaces.Clearable

clear

Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject

showGUI

Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions

allCoordinates, availableCoordinates, containsCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates

Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters

getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray

Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations

atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations

abs, exp, log, log10, log2, logistic, power, power, sign, sqrt

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations

ceil, floor, round

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations

cosh, sinh, tanh, tanh

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations

cos, sin, tan

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations

eye, nans, ones, rand, randn, zeros

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.misc.MiscEntrywiseDoubleCalculations

grayScale

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations

corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations

chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, pinv, princomp, qr, solve, solveSPD, solveSymm, svd, svd

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations

addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations

append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations

discretize, discretize, discretizeToBoolean, discretizeToColumns

Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations

and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor

Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations

convertEncoding, lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, translate, upperCase

Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations

bootstrap, bootstrap, convert, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, diag, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount

Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures

chebyshevDistanceTo, cosineSimilarity, cosineSimilarityTo, euklideanDistance, euklideanDistanceTo, manhattenDistance, manhattenDistanceTo, minkowskiDistance, minkowskiDistanceTo

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface org.ujmp.core.annotation.HasMetaData

getColumnForLabel, getColumnLabel, getDimensionLabel, getDimensionMetaData, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getPositionForLabel, getRowForLabel, getRowLabel, setColumnLabel, setDimensionLabel, setDimensionMetaData, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel

Methods inherited from interface org.ujmp.core.interfaces.HasLabel

getLabel, getLabelObject, setLabel

Methods inherited from interface org.ujmp.core.interfaces.HasDescription

getDescription, setDescription

Methods inherited from interface org.ujmp.core.interfaces.HasId

getId, setId

Methods inherited from interface org.ujmp.core.interfaces.Conversions

toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix

Methods inherited from interface org.ujmp.core.interfaces.ExtendedMatrixProperties

bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getStdValue, getValueSum, intValue, isSPD, longValue, norm1, norm2, normF, normInf, pdet, rank, setContent, shortValue, stringValue, trace

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, get, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, replaceAll, retainAll, set, size, sort, spliterator, subList, toArray, toArray

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Constructor Detail

AbstractListDataSet

public AbstractListDataSet()

Method Detail

getInputMatrix

public final Matrix getInputMatrix()

Specified by:

getInputMatrix in interface DataSet

getPredictedMatrix

public final Matrix getPredictedMatrix()

Specified by:

getPredictedMatrix in interface DataSet

getTargetMatrix

public final Matrix getTargetMatrix()

Specified by:

getTargetMatrix in interface DataSet

splitByCount

public final java.util.List<ListDataSet> splitByCount(boolean shuffle,
                                                      int... count)

Specified by:

splitByCount in interface DataSet

splitForCV

public final java.util.List<ListDataSet> splitForCV(int numberOfCVSets,
                                                    int idOfCVSet,
                                                    long randomSeed)

Specified by:

splitForCV in interface DataSet

splitByPercent

public final java.util.List<ListDataSet> splitByPercent(boolean shuffle,
                                                        double... percent)

Specified by:

splitByPercent in interface DataSet

toString

public final java.lang.String toString()

Specified by:

toString in interface BaseMatrixProperties

Overrides:

toString in class AbstractMatrix

getGUIObject

public final GUIObject getGUIObject()

Description copied from interface: HasGUIObject

Returns an object suitable for displaying on the screen. Ensures that, for each basic object, only one GUIObject can be returned.

Specified by:

getGUIObject in interface HasGUIObject

Overrides:

getGUIObject in class AbstractMatrix

Returns:

object suitable for displaying on the screen

clone

public abstract ListDataSet clone()

Specified by:

clone in interface DataSet

Specified by:

clone in interface CoreObject

Specified by:

clone in interface Matrix

Overrides:

clone in class AbstractMatrix

getMatrix

public final Matrix getMatrix(java.lang.Object key)

Specified by:

getMatrix in interface DataSet

keySet

public final java.util.Set<java.lang.String> keySet()

Specified by:

keySet in interface DataSet

setMatrix

public final void setMatrix(java.lang.String key,
                            Matrix matrix)

Specified by:

setMatrix in interface DataSet

getAsDouble

public final double getAsDouble(java.lang.String key)

Specified by:

getAsDouble in interface DataSet

bootstrap

public final ListDataSet bootstrap(int numberOfSamples)

Specified by:

bootstrap in interface DataSet

isDiscrete

public final boolean isDiscrete()

Specified by:

isDiscrete in interface DataSet

getFeatureCount

public final int getFeatureCount()

Specified by:

getFeatureCount in interface DataSet

bootstrap

public final ListDataSet bootstrap()

Specified by:

bootstrap in interface DataSet

getClassDistribution

public final Matrix getClassDistribution()

appendRMSEMatrix

public final void appendRMSEMatrix(Matrix m)

getRMSE

public final double getRMSE()

getRMSEMatrix

public final Matrix getRMSEMatrix()

getClassCount

public final int getClassCount()

Specified by:

getClassCount in interface DataSet

getErrorCount

public final int getErrorCount()

Specified by:

getErrorCount in interface DataSet

getAccuracy

public final double getAccuracy()

Specified by:

getAccuracy in interface DataSet

splitByClass

public final java.util.List<ListDataSet> splitByClass()

splitForStratifiedCV

public final java.util.List<ListDataSet> splitForStratifiedCV(int numberOfCVSets,
                                                              int idOfCVSet,
                                                              long randomSeed)

Specified by:

splitForStratifiedCV in interface DataSet