org.ujmp.core.doublematrix.stub

Class AbstractSparseDoubleMatrix2D

java.lang.Object

java.lang.Number

org.ujmp.core.AbstractMatrix

org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<T>

org.ujmp.core.numbermatrix.stub.AbstractNumberMatrix<java.lang.Double>

org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix

org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix2D

org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix2D

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Comparable<Matrix>, HasMetaData, BaseMatrix, BooleanCalculations, CanPerformCalculations, DenseMatrix, DenseMatrix2D, DenseMatrixMultiD, BaseDoubleMatrix, BasicDoubleCalculations, DoubleCalculations, BasicEntrywiseDoubleCalculations, CreatorDoubleCalculations, EntrywiseDoubleCalculations, HyperbolicDoubleCalculations, MiscEntrywiseDoubleCalculations, RoundingDoubleCalculations, TrigonometricDoubleCalculations, DecompositionDoubleCalculations, DiscretizeCalculations, GeneralDoubleCalculations, MiscGeneralDoubleCalculations, MissingValueDoubleCalculations, StatisticalDoubleCalculations, DenseDoubleMatrix, DenseDoubleMatrix2D, DenseDoubleMatrixMultiD, DoubleMatrix, DoubleMatrix2D, DoubleMatrixMultiD, SparseDoubleMatrix, SparseDoubleMatrix2D, SparseDoubleMatrixMultiD, BaseGenericMatrix<java.lang.Double>, DenseGenericMatrix<java.lang.Double>, DenseGenericMatrix2D<java.lang.Double>, DenseGenericMatrixMultiD<java.lang.Double>, GenericMatrix<java.lang.Double>, GenericMatrix2D<java.lang.Double>, GenericMatrixMultiD<java.lang.Double>, SparseGenericMatrix<java.lang.Double>, SparseGenericMatrix2D<java.lang.Double>, SparseGenericMatrixMultiD<java.lang.Double>, BaseMatrixProperties, Clearable, Conversions, CoordinateFunctions, CoreObject, DistanceMeasures, ExtendedMatrixProperties, GettersAndSetters, HasDescription, HasGUIObject, HasId, HasLabel, IntCalculations, Matrix, Matrix2D, MatrixMultiD, BaseNumberMatrix<java.lang.Double>, DenseNumberMatrix<java.lang.Double>, DenseNumberMatrix2D<java.lang.Double>, DenseNumberMatrixMultiD<java.lang.Double>, NumberMatrix<java.lang.Double>, NumberMatrix2D<java.lang.Double>, NumberMatrixMultiD<java.lang.Double>, SparseNumberMatrix<java.lang.Double>, SparseNumberMatrix2D<java.lang.Double>, SparseNumberMatrixMultiD<java.lang.Double>, ObjectCalculations, SparseMatrix, SparseMatrix2D, SparseMatrixMultiD, StringCalculations

Direct Known Subclasses:

AbstractTreeMatrix, DefaultSparseDoubleVector1D, DefaultSparseRowDoubleMatrix2D, IndexedSparseDoubleMatrix2D, SparseFeatureVector

public abstract class AbstractSparseDoubleMatrix2D
extends AbstractDoubleMatrix2D
implements SparseDoubleMatrix2D

See Also:

Serialized Form

Field Summary

Fields inherited from interface org.ujmp.core.doublematrix.SparseDoubleMatrix2D

Factory

Fields inherited from interface org.ujmp.core.Matrix

chol, divideMatrix, divideScalar, eig, inv, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, svd, timesMatrix, timesScalar, transpose

Fields inherited from interface org.ujmp.core.BaseMatrix

ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z

Fields inherited from interface org.ujmp.core.annotation.HasMetaData

DIMENSIONMETADATA

Fields inherited from interface org.ujmp.core.interfaces.HasLabel

LABEL

Fields inherited from interface org.ujmp.core.interfaces.HasDescription

DESCRIPTION

Fields inherited from interface org.ujmp.core.interfaces.HasId

ID

Fields inherited from interface org.ujmp.core.doublematrix.DoubleMatrix

Factory

Constructor Summary

Constructors

Constructor and Description
AbstractSparseDoubleMatrix2D(long rows, long columns)

Method Summary

Modifier and Type	Method and Description
abstract java.lang.Iterable<long[]>	availableCoordinates() Returns an Iterator that only goes over the coordinates in the Matrix that are stored.
int	getDimensionCount()
java.lang.Double	getObject(int row, int column)
java.lang.Double	getObject(long row, long column)
boolean	isSparse()
void	setObject(java.lang.Double o, int row, int column)
void	setObject(java.lang.Double o, long row, long column)

Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix2D

getDouble, setDouble

Methods inherited from class org.ujmp.core.doublematrix.stub.AbstractDoubleMatrix

getAsDouble, getNumber, getObject, getValueType, setAsDouble, setNumber, setObject

Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix

getAsObject, setAsObject

Methods inherited from class org.ujmp.core.AbstractMatrix

abs, addMissing, allCoordinates, allValues, and, and, append, appendHorizontally, appendVertically, atimes, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, convertEncoding, corrcoef, cos, cosh, cosineSimilarity, cosineSimilarityTo, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diag, diff, discretize, discretize, discretizeToBoolean, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistance, euklideanDistanceTo, exp, exportTo, extractAnnotation, eye, fadeIn, fadeOut, fill, fireValueChanged, fireValueChanged, fireValueChanged, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getColumnCount, getColumnForLabel, getColumnLabel, getColumnList, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDescription, getDimensionLabel, getDimensionMetaData, getEuklideanValue, getFactory, getGUIObject, getId, getLabel, getLabelObject, getMaxValue, getMeanValue, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowList, getSize, getSize, getStdValue, getValueCount, getValueSum, getZCount, ginv, grayScale, gt, gt, importFrom, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, logistic, longValue, lowerCase, lt, lt, lu, manhattenDistance, manhattenDistanceTo, max, mean, min, minkowskiDistance, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mutualInf, nans, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, ones, or, or, pairedTTest, pdet, pinv, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, save, save, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setColumnLabel, setContent, setDescription, setDimensionLabel, setDimensionMetaData, setId, setLabel, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel, setSize, share, share, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, svd, swap, tan, tanh, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toHtml, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, translate, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros

Methods inherited from class java.lang.Number

byteValue, shortValue

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.ujmp.core.doublematrix.DoubleMatrix2D

getDouble, getDouble, setDouble, setDouble

Methods inherited from interface org.ujmp.core.Matrix

clone, exportTo, fireValueChanged, fireValueChanged, fireValueChanged, importFrom, save, save, share, share, toHtml

Methods inherited from interface org.ujmp.core.BaseMatrix

getFactory

Methods inherited from interface org.ujmp.core.interfaces.BaseMatrixProperties

allValues, equals, equalsAnnotation, equalsContent, getColumnCount, getColumnList, getRowCount, getRowList, getSize, getSize, getValueCount, getValueType, getZCount, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSquare, isSymmetric, isTransient, setSize, toString

Methods inherited from interface org.ujmp.core.interfaces.CoreObject

getCoreObjectId

Methods inherited from interface org.ujmp.core.interfaces.Clearable

clear

Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject

getGUIObject, showGUI

Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions

allCoordinates, containsCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates

Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters

getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsDouble, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsDouble, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray

Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations

atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations

abs, exp, log, log10, log2, logistic, power, power, sign, sqrt

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations

ceil, floor, round

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations

cosh, sinh, tanh, tanh

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations

cos, sin, tan

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations

eye, nans, ones, rand, randn, zeros

Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.misc.MiscEntrywiseDoubleCalculations

grayScale

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations

corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations

chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, pinv, princomp, qr, solve, solveSPD, solveSymm, svd, svd

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations

addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations

append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize

Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations

discretize, discretize, discretizeToBoolean, discretizeToColumns

Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations

and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor

Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations

convertEncoding, lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, translate, upperCase

Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations

bootstrap, bootstrap, convert, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, diag, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount

Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures

chebyshevDistanceTo, cosineSimilarity, cosineSimilarityTo, euklideanDistance, euklideanDistanceTo, manhattenDistance, manhattenDistanceTo, minkowskiDistance, minkowskiDistanceTo

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface org.ujmp.core.annotation.HasMetaData

getColumnForLabel, getColumnLabel, getDimensionLabel, getDimensionMetaData, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getPositionForLabel, getRowForLabel, getRowLabel, setColumnLabel, setDimensionLabel, setDimensionMetaData, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel

Methods inherited from interface org.ujmp.core.interfaces.HasLabel

getLabel, getLabelObject, setLabel

Methods inherited from interface org.ujmp.core.interfaces.HasDescription

getDescription, setDescription

Methods inherited from interface org.ujmp.core.interfaces.HasId

getId, setId

Methods inherited from interface org.ujmp.core.interfaces.Conversions

toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix

Methods inherited from interface org.ujmp.core.interfaces.ExtendedMatrixProperties

bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getStdValue, getValueSum, intValue, isSPD, longValue, norm1, norm2, normF, normInf, pdet, rank, setContent, shortValue, stringValue, trace

Constructor Detail

AbstractSparseDoubleMatrix2D

public AbstractSparseDoubleMatrix2D(long rows,
                                    long columns)

Method Detail

getObject

public final java.lang.Double getObject(long row,
                                        long column)

Specified by:

getObject in interface GenericMatrix2D<java.lang.Double>

Overrides:

getObject in class AbstractGenericMatrix<java.lang.Double>

setObject

public final void setObject(java.lang.Double o,
                            long row,
                            long column)

Specified by:

setObject in interface GenericMatrix2D<java.lang.Double>

Overrides:

setObject in class AbstractGenericMatrix<java.lang.Double>

getObject

public final java.lang.Double getObject(int row,
                                        int column)

Specified by:

getObject in interface GenericMatrix2D<java.lang.Double>

Overrides:

getObject in class AbstractGenericMatrix<java.lang.Double>

setObject

public final void setObject(java.lang.Double o,
                            int row,
                            int column)

Specified by:

setObject in interface GenericMatrix2D<java.lang.Double>

Overrides:

setObject in class AbstractGenericMatrix<java.lang.Double>

getDimensionCount

public final int getDimensionCount()

Specified by:

getDimensionCount in interface BaseMatrixProperties

Overrides:

getDimensionCount in class AbstractMatrix

isSparse

public final boolean isSparse()

Specified by:

isSparse in interface BaseMatrixProperties

availableCoordinates

public abstract java.lang.Iterable<long[]> availableCoordinates()

Description copied from interface: CoordinateFunctions

Returns an Iterator that only goes over the coordinates in the Matrix that are stored. For most Matrices, this is the same as allCoordinates(). For sparse Matrices, it iterates only over the entries in it.

Specified by:

availableCoordinates in interface CoordinateFunctions

Returns:

Iterable over the saved entries in a Matrix.