medusa.stringconnection

Class GetCogGraph

java.lang.Object

medusa.stringconnection.GetCogGraph

All Implemented Interfaces:

java.lang.Runnable

public class GetCogGraph
extends java.lang.Object
implements java.lang.Runnable

Gets a graph of COGS from STRING www.string.embl.de is maintained by Christian von Mering (mering@embl.de)

Constructor Summary

Constructors

Constructor and Description
GetCogGraph(java.lang.String url, int port, java.lang.String[] queries, float cutoff) Talks to the STRING serverside socket

Method Summary

Modifier and Type	Method and Description
void	getCogGraphFromString()
Graph	getGraph() Returns the graph
int	getProgress()
java.lang.String	getStatus() Tells the other threads what GetCogGraph is doing at the moment.
boolean	isDone() Returns true if the data transfer is finished
void	run()
void	start()
void	stop()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GetCogGraph

public GetCogGraph(java.lang.String url,
                   int port,
                   java.lang.String[] queries,
                   float cutoff)

Talks to the STRING serverside socket

Parameters:

url -

port -

queries -

cutoff -

Method Detail

getStatus

public java.lang.String getStatus()

Tells the other threads what GetCogGraph is doing at the moment.

Returns:

Status

getGraph

public Graph getGraph()

Returns the graph

Returns:

the data from STRING

start

public void start()

stop

public void stop()

run

public void run()

Specified by:

run in interface java.lang.Runnable

getProgress

public int getProgress()

isDone

public boolean isDone()

Returns true if the data transfer is finished

Returns:

true if done

getCogGraphFromString

public void getCogGraphFromString()
                           throws java.io.IOException,
                                  java.lang.NumberFormatException

Throws:

java.io.IOException

java.lang.NumberFormatException