medusa.georgios.Layouts

Class Layouts

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

javax.swing.JFrame

medusa.MedusaSimplerFrame

medusa.georgios.Layouts.Layouts

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class Layouts
extends MedusaSimplerFrame

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

Fields

Modifier and Type	Field and Description
static Affinity_Propagation	affinity_propagation_clustering
static java.lang.String	affinity_propagation_report
static LoadClusters	cl
static KMeans2	kmeans
static My_MarkovClustering	markov_clustering
static java.lang.String	markov_clustering_report

Fields inherited from class medusa.MedusaSimplerFrame

channel1MenuItem, channel2MenuItem, channel3MenuItem, interactionMenu, jMenuItem4, jRadioButtonMenuItem1, jScrollPane, STRINGCOLOR, stringletPanel, version

Fields inherited from class javax.swing.JFrame

EXIT_ON_CLOSE

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
Layouts()

Method Summary

Modifier and Type	Method and Description
static void	Apply_Affinity_Propagation_Clustering(Graph g, java.awt.Component screen)
static java.util.ArrayList<Point3d>	Apply_Circular_Coordinates(Graph g, java.awt.Component screen)
static void	Apply_Distance_Geomretry_Coordinates(Graph g, java.awt.Component screen)
static void	Apply_GO_like_Coordinates(Graph g, java.awt.Component screen)
static void	Apply_Grid_Coordinates(Graph g, java.awt.Component screen)
static void	Apply_Kmeans_Clustering(Graph g, java.awt.Component screen) Run k-means clustering with a given number of clusters.
static void	Apply_Kmeans_Clustering(Graph g, java.awt.Component screen, int nclusters) Run k-means clustering with a given number of clusters.
static void	Apply_MCL_Propagation_Clustering(Graph gg, java.awt.Component screen)
static void	Apply_Predefined_Clustering(Graph gg, java.awt.Component screen)
static void	Apply_Random_Coordinates(Graph g, java.awt.Component screen)
static void	distribute_clusters(Graph g, java.awt.Component screen)
static void	Initialize_AffinityPropagation(Graph g, java.awt.Component screen)
static boolean	Initialize_Kmeans(BasicGraph gg, int nclusters)
static void	Initialize_MarkovClustering(Graph gg, java.awt.Component screen)
static int	spread_to_grid(int n)

Methods inherited from class medusa.MedusaSimplerFrame

alignNodes, checkArgs, clearGraphEvent, clearImageEvent, getPanel, getSettings, handleEdgeEvent, hide_starting_background, loadImageEvent, main, quitApplication, saveSettings, scaleOut, setLnF, setNodeColorSet, setScale, setScale, stopRelax, updateInfo, waitForLoad

Methods inherited from class javax.swing.JFrame

getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

cl

public static LoadClusters cl

affinity_propagation_clustering

public static Affinity_Propagation affinity_propagation_clustering

markov_clustering

public static My_MarkovClustering markov_clustering

kmeans

public static KMeans2 kmeans

affinity_propagation_report

public static java.lang.String affinity_propagation_report

markov_clustering_report

public static java.lang.String markov_clustering_report

Constructor Detail

Layouts

public Layouts()

Method Detail

Apply_GO_like_Coordinates

public static void Apply_GO_like_Coordinates(Graph g,
                                             java.awt.Component screen)

Apply_Distance_Geomretry_Coordinates

public static void Apply_Distance_Geomretry_Coordinates(Graph g,
                                                        java.awt.Component screen)

Apply_Circular_Coordinates

public static java.util.ArrayList<Point3d> Apply_Circular_Coordinates(Graph g,
                                                                      java.awt.Component screen)

spread_to_grid

public static int spread_to_grid(int n)

Apply_Grid_Coordinates

public static void Apply_Grid_Coordinates(Graph g,
                                          java.awt.Component screen)

Initialize_Kmeans

public static boolean Initialize_Kmeans(BasicGraph gg,
                                        int nclusters)

Initialize_MarkovClustering

public static void Initialize_MarkovClustering(Graph gg,
                                               java.awt.Component screen)

Apply_Kmeans_Clustering

public static void Apply_Kmeans_Clustering(Graph g,
                                           java.awt.Component screen)

Run k-means clustering with a given number of clusters. It will ask a question about required clusters.

Parameters:

g - graph

screen - component

Apply_Kmeans_Clustering

public static void Apply_Kmeans_Clustering(Graph g,
                                           java.awt.Component screen,
                                           int nclusters)

Run k-means clustering with a given number of clusters. No question will be asked.

Parameters:

g - graph

screen - component

Apply_MCL_Propagation_Clustering

public static void Apply_MCL_Propagation_Clustering(Graph gg,
                                                    java.awt.Component screen)

Initialize_AffinityPropagation

public static void Initialize_AffinityPropagation(Graph g,
                                                  java.awt.Component screen)

Apply_Random_Coordinates

public static void Apply_Random_Coordinates(Graph g,
                                            java.awt.Component screen)

Apply_Affinity_Propagation_Clustering

public static void Apply_Affinity_Propagation_Clustering(Graph g,
                                                         java.awt.Component screen)

Apply_Predefined_Clustering

public static void Apply_Predefined_Clustering(Graph gg,
                                               java.awt.Component screen)

distribute_clusters

public static void distribute_clusters(Graph g,
                                       java.awt.Component screen)