medusa.georgios.ClusteringAlgorithms

Class UPGMA

java.lang.Object

medusa.georgios.ClusteringAlgorithms.UPGMA

public class UPGMA
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.StringBuffer	NHX

Constructor Summary

Constructors

Constructor and Description
UPGMA(float[][] ds)

Method Summary

Modifier and Type	Method and Description
float	d(int i, int j)
medusa.georgios.ClusteringAlgorithms.UPCluster	getRoot()
boolean	is_internal(medusa.georgios.ClusteringAlgorithms.UPCluster cluster)
void	join(int i, int j)
java.lang.String	NewickFormat(medusa.georgios.ClusteringAlgorithms.UPCluster cluster)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NHX

public java.lang.StringBuffer NHX

Constructor Detail

UPGMA

public UPGMA(float[][] ds)

Method Detail

getRoot

public medusa.georgios.ClusteringAlgorithms.UPCluster getRoot()

d

public float d(int i,
               int j)

join

public void join(int i,
                 int j)

is_internal

public boolean is_internal(medusa.georgios.ClusteringAlgorithms.UPCluster cluster)

NewickFormat

public java.lang.String NewickFormat(medusa.georgios.ClusteringAlgorithms.UPCluster cluster)