jhpro.tseries

Class Multiplet

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.Vector<Peak>

jhpro.tseries.Multiplet

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<Peak>, java.util.Collection<Peak>, java.util.List<Peak>, java.util.RandomAccess

public class Multiplet
extends java.util.Vector<Peak>

Class designed to store peaks.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Multiplet() Creates new Multiplet
Multiplet(Peak p)

Method Summary

Modifier and Type	Method and Description
void	addMultiplet(Multiplet madd)
void	addPeak(Peak p)
double[]	getAllCentroids()
Peak[]	getAllPeaks()
double[]	getCentroidErrors()
Peak	getPeak(int index)
Peak	getPeakNear(double centroid, double tolerance) Returns peak nearest given centroid if distance is less than the given tolerance.
Multiplet	lastPeaks(int n) Returns a new multiplet containing only the last n peaks of this multiplet.
int	removeAreaGreaterThan(double max) Removes all peaks with greater than the specified area.
int	removeAreaLessThan(double min) Removes all peaks with less than the specified area.

Methods inherited from class java.util.Vector

add, add, addAll, addAll, addElement, capacity, clear, clone, contains, containsAll, copyInto, elementAt, elements, ensureCapacity, equals, firstElement, forEach, get, hashCode, indexOf, indexOf, insertElementAt, isEmpty, iterator, lastElement, lastIndexOf, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeAllElements, removeElement, removeElementAt, removeIf, replaceAll, retainAll, set, setElementAt, setSize, size, sort, spliterator, subList, toArray, toArray, toString, trimToSize

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

parallelStream, stream

Constructor Detail

Multiplet

public Multiplet()

Creates new Multiplet

Multiplet

public Multiplet(Peak p)

Method Detail

getAllPeaks

public Peak[] getAllPeaks()

getAllCentroids

public double[] getAllCentroids()

getCentroidErrors

public double[] getCentroidErrors()

addMultiplet

public void addMultiplet(Multiplet madd)

removeAreaLessThan

public int removeAreaLessThan(double min)

Removes all peaks with less than the specified area.

Parameters:

min - minimum area to retain the peak

Returns:

number of peaks remaining

removeAreaGreaterThan

public int removeAreaGreaterThan(double max)

Removes all peaks with greater than the specified area.

Parameters:

min - minimum area to retain the peak

Returns:

number of peaks remaining

getPeakNear

public Peak getPeakNear(double centroid,
                        double tolerance)

Returns peak nearest given centroid if distance is less than the given tolerance.

lastPeaks

public Multiplet lastPeaks(int n)

Returns a new multiplet containing only the last n peaks of this multiplet.

addPeak

public void addPeak(Peak p)

getPeak

public Peak getPeak(int index)