ij.process

Class ImageStatistics

java.lang.Object

ij.process.ImageStatistics

All Implemented Interfaces:

Measurements

Direct Known Subclasses:

ByteStatistics, ColorStatistics, FloatStatistics, ShortStatistics, StackStatistics

public class ImageStatistics
extends java.lang.Object
implements Measurements

Statistics, including the histogram, of an image or selection.

Field Summary

Fields

Modifier and Type	Field and Description
double	angle Angle in degrees of fitted ellipse
double	area
double	areaFraction
double	binSize
double	dmode Double mode
double	histMax
double	histMin
int[]	histogram Use getHIstogram() to get histogram as long array.
int[]	histogram16 Bin width 1 histogram of 16-bit images
int	histYMax
double	kurtosis
long	longPixelCount Long pixel count
double	lowerThreshold Minimum threshold when "Limit to threshold" enabled
double	major Length of major axis of fitted ellipse
double	max
int	maxCount
double	mean
double	median
double	min
double	minor Length of minor axis of fitted ellipse
int	mode Int mode (limited to 2^31-1)
int	nBins
int	pixelCount Int pixel count (limited to 2^31-1)
double	roiHeight
double	roiWidth
double	roiX
double	roiY
double	skewness
boolean	stackStatistics Used by HistogramWindow
double	stdDev
double	umean Uncalibrated mean
double	upperThreshold Maximum threshold when "Limit to threshold" enabled
double	xCenterOfMass
double	xCentroid
int	xstart Used internally by AnalyzeParticles
double	yCenterOfMass
double	yCentroid
int	ystart Used internally by AnalyzeParticles

Fields inherited from interface ij.measure.Measurements

ADD_TO_OVERLAY, ALL_STATS, AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, NaN_EMPTY_CELLS, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV

Constructor Summary

Constructors

Constructor and Description
ImageStatistics()

Method Summary

Modifier and Type	Method and Description
void	drawEllipse(ImageProcessor ip)
long[]	getHistogram() Returns the histogram as an array of longs.
static ImageStatistics	getStatistics(ImageProcessor ip)
static ImageStatistics	getStatistics(ImageProcessor ip, int mOptions, Calibration cal)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

histogram

public int[] histogram

Use getHIstogram() to get histogram as long array.

pixelCount

public int pixelCount

Int pixel count (limited to 2^31-1)

longPixelCount

public long longPixelCount

Long pixel count

mode

public int mode

Int mode (limited to 2^31-1)

dmode

public double dmode

Double mode

area

public double area

min

public double min

max

public double max

mean

public double mean

median

public double median

stdDev

public double stdDev

skewness

public double skewness

kurtosis

public double kurtosis

xCentroid

public double xCentroid

yCentroid

public double yCentroid

xCenterOfMass

public double xCenterOfMass

yCenterOfMass

public double yCenterOfMass

roiX

public double roiX

roiY

public double roiY

roiWidth

public double roiWidth

roiHeight

public double roiHeight

umean

public double umean

Uncalibrated mean

major

public double major

Length of major axis of fitted ellipse

minor

public double minor

Length of minor axis of fitted ellipse

angle

public double angle

Angle in degrees of fitted ellipse

histogram16

public int[] histogram16

Bin width 1 histogram of 16-bit images

areaFraction

public double areaFraction

xstart

public int xstart

Used internally by AnalyzeParticles

ystart

public int ystart

Used internally by AnalyzeParticles

stackStatistics

public boolean stackStatistics

Used by HistogramWindow

lowerThreshold

public double lowerThreshold

Minimum threshold when "Limit to threshold" enabled

upperThreshold

public double upperThreshold

Maximum threshold when "Limit to threshold" enabled

histMin

public double histMin

histMax

public double histMax

histYMax

public int histYMax

maxCount

public int maxCount

nBins

public int nBins

binSize

public double binSize

Constructor Detail

ImageStatistics

public ImageStatistics()

Method Detail

getStatistics

public static ImageStatistics getStatistics(ImageProcessor ip)

getStatistics

public static ImageStatistics getStatistics(ImageProcessor ip,
                                            int mOptions,
                                            Calibration cal)

drawEllipse

public void drawEllipse(ImageProcessor ip)

getHistogram

public long[] getHistogram()

Returns the histogram as an array of longs.

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object