edu.rit.compbio.seq.test

Class TestSmp

java.lang.Object

edu.rit.compbio.seq.test.TestSmp

public class TestSmp
extends java.lang.Object

Class TestSmp is a unit test main program for classes ProteinSequence and ProteinLocalAlignmentSmp. The program reads in a query sequence and a subject sequence, aligns them in a parallel thread team, and prints the alignment.

Usage: java -Dpj.nt=K edu.rit.compbio.seq.test.TestSmp queryfile subjectfile
K = Number of parallel threads
queryfile = Query sequence file
subjectfile = Subject sequence file

Method Summary

Modifier and Type	Method and Description
static void	main(java.lang.String[] args) Main program.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Main program.

Throws:

java.lang.Exception