edu.rit.compbio.seq.test

Class SummarizeDatabase

java.lang.Object

edu.rit.compbio.seq.test.SummarizeDatabase

public class SummarizeDatabase
extends java.lang.Object

Class SummarizeDatabase is a unit test main program for classes ProteinDatabase and ProteinSequence. The program prints summary statistics for the protein sequence database, including number of sequences, total sequence length, smallest sequence length, largest sequence length, and a histogram of the sequence lengths.

Usage: java edu.rit.compbio.seq.test.SummarizeDatabase databasefile indexfile binsize
databasefile = Protein sequence database file
indexfile = Protein sequence index file
binsize = Sequence length histogram bin size

Method Summary

Modifier and Type	Method and Description
static void	main(java.lang.String[] args) Main program.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Main program.

Throws:

java.lang.Exception