edu.jas.poly

Class OverlapList

java.lang.Object

edu.jas.poly.OverlapList

All Implemented Interfaces:

java.io.Serializable

public class OverlapList
extends java.lang.Object
implements java.io.Serializable

Container for lists of overlap words. List of Overlaps.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
java.util.List<Overlap>	ols

Constructor Summary

Constructors

Constructor and Description
OverlapList() Constructor.

Method Summary

Modifier and Type	Method and Description
void	add(Overlap ol) Add to list.
boolean	isOverlap(Word u, Word v) Is word overlap list.
java.lang.String	toString() Get the string representation.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ols

public final java.util.List<Overlap> ols

Constructor Detail

OverlapList

public OverlapList()

Constructor.

Method Detail

add

public void add(Overlap ol)

Add to list.

toString

public java.lang.String toString()

Get the string representation.

Overrides:

toString in class java.lang.Object

See Also:

Object.toString()

isOverlap

public boolean isOverlap(Word u,
                         Word v)

Is word overlap list.

Parameters:

u - word

v - word

Returns:

true if l1 * u * r1 = l2 * v * r2 for all overlaps, else false.