cern.colt.matrix.tlong.impl

Class DenseLongMatrix1D

java.lang.Object

cern.colt.PersistentObject

cern.colt.matrix.AbstractMatrix

cern.colt.matrix.AbstractMatrix1D

cern.colt.matrix.tlong.LongMatrix1D

cern.colt.matrix.tlong.impl.DenseLongMatrix1D

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class DenseLongMatrix1D
extends LongMatrix1D

Dense 1-d matrix (aka vector) holding int elements. First see the package summary and javadoc tree view to get the broad picture.

Implementation:

Longernally holds one single contigous one-dimensional array. Note that this implementation is not synchronized.

Memory requirements:

memory [bytes] = 8*size(). Thus, a 1000000 matrix uses 8 MB.

Time complexity:

O(1) (i.e. constant time) for the basic operations get, getQuick, set, setQuick and size,

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
DenseLongMatrix1D(int size) Constructs a matrix with a given number of cells.
DenseLongMatrix1D(int size, long[] elements, int zero, int stride, boolean isView) Constructs a matrix with the given parameters.
DenseLongMatrix1D(long[] values) Constructs a matrix with a copy of the given values.

Method Summary

Modifier and Type	Method and Description
long	aggregate(LongLongFunction aggr, LongFunction f) Applies a function to each cell and aggregates the results.
long	aggregate(LongLongFunction aggr, LongFunction f, IntArrayList indexList) Applies a function to all cells with a given indexes and aggregates the results.
long	aggregate(LongMatrix1D other, LongLongFunction aggr, LongLongFunction f) Applies a function to each corresponding cell of two matrices and aggregates the results.
LongMatrix1D	assign(int[] values) Sets all cells to the state specified by values.
LongMatrix1D	assign(long value) Sets all cells to the state specified by value.
LongMatrix1D	assign(long[] values) Sets all cells to the state specified by values.
LongMatrix1D	assign(LongFunction function) Assigns the result of a function to each cell; x[i] = function(x[i]).
LongMatrix1D	assign(LongMatrix1D source) Replaces all cell values of the receiver with the values of another matrix.
LongMatrix1D	assign(LongMatrix1D y, LongLongFunction function) Assigns the result of a function to each cell; x[i] = function(x[i],y[i]).
LongMatrix1D	assign(LongProcedure cond, long value) Assigns a value to all cells that satisfy a condition.
LongMatrix1D	assign(LongProcedure cond, LongFunction function) Assigns the result of a function to all cells that satisfy a condition.
int	cardinality() Returns the number of cells having non-zero values; ignores tolerance.
long[]	elements() Returns the elements of this matrix.
long[]	getMaxLocation() Return the maximum value of this matrix together with its location
long[]	getMinLocation() Return the minimum value of this matrix together with its location
void	getNegativeValues(LongArrayList indexList, LongArrayList valueList)
void	getNonZeros(LongArrayList indexList, LongArrayList valueList)
void	getPositiveValues(LongArrayList indexList, LongArrayList valueList)
long	getQuick(int index) Returns the matrix cell value at coordinate index.
long	index(int rank) Returns the position of the element with the given relative rank within the (virtual or non-virtual) internal 1-dimensional array.
LongMatrix1D	like(int size) Construct and returns a new empty matrix of the same dynamic type as the receiver, having the specified size.
LongMatrix2D	like2D(int rows, int columns) Construct and returns a new 2-d matrix of the corresponding dynamic type, entirelly independent of the receiver.
LongMatrix2D	reshape(int rows, int columns) Returns new LongMatrix2D of size rows x columns whose elements are taken column-wise from this matrix.
LongMatrix3D	reshape(int slices, int rows, int columns) Returns new LongMatrix3D of size slices x rows x columns, whose elements are taken column-wise from this matrix.
void	setQuick(int index, long value) Sets the matrix cell at coordinate index to the specified value.
void	swap(LongMatrix1D other) Swaps each element this[i] with other[i].
void	toArray(long[] values) Fills the cell values into the specified 1-dimensional array.
long	zDotProduct(LongMatrix1D y) Returns the dot product of two vectors x and y, which is Sum(x[i]*y[i]).
long	zDotProduct(LongMatrix1D y, int from, int length) Returns the dot product of two vectors x and y, which is Sum(x[i]*y[i]).
long	zSum() Returns the sum of all cells; Sum( x[i] ).

Methods inherited from class cern.colt.matrix.tlong.LongMatrix1D

assign, copy, equals, equals, get, getNegativeValues, getNonZeros, getNonZeros, getPositiveValues, like, set, setSize, toArray, toString, viewFlip, viewPart, viewSelection, viewSelection, viewSorted, viewStrides, zDotProduct

Methods inherited from class cern.colt.matrix.AbstractMatrix1D

checkSize, size, stride, toStringShort

Methods inherited from class cern.colt.matrix.AbstractMatrix

ensureCapacity, isView, trimToSize

Methods inherited from class cern.colt.PersistentObject

clone

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DenseLongMatrix1D

public DenseLongMatrix1D(long[] values)

Constructs a matrix with a copy of the given values. The values are copied. So subsequent changes in values are not reflected in the matrix, and vice-versa.

Parameters:

values - The values to be filled into the new matrix.

DenseLongMatrix1D

public DenseLongMatrix1D(int size)

Constructs a matrix with a given number of cells. All entries are initially 0.

Parameters:

size - the number of cells the matrix shall have.

Throws:

java.lang.IllegalArgumentException - if size<0.

DenseLongMatrix1D

public DenseLongMatrix1D(int size,
                         long[] elements,
                         int zero,
                         int stride,
                         boolean isView)

Constructs a matrix with the given parameters.

Parameters:

size - the number of cells the matrix shall have.

elements - the cells.

zero - the index of the first element.

stride - the number of indexes between any two elements, i.e. index(i+1)-index(i).

isView - if true then a matrix view is constructed

Throws:

java.lang.IllegalArgumentException - if size<0.

Method Detail

aggregate

public long aggregate(LongLongFunction aggr,
                      LongFunction f)

Description copied from class: LongMatrix1D

Applies a function to each cell and aggregates the results. Returns a value v such that v==a(size()) where a(i) == aggr( a(i-1), f(get(i)) ) and terminators are a(1) == f(get(0)), a(0)==Long.NaN.

Example:

   cern.jet.math.Functions F = cern.jet.math.Functions.functions;
   matrix = 0 1 2 3 
 
   // Sum( x[i]*x[i] ) 
   matrix.aggregate(F.plus,F.square);
   --> 14
 
 

For further examples, see the package doc.

Overrides:

aggregate in class LongMatrix1D

Parameters:

aggr - an aggregation function taking as first argument the current aggregation and as second argument the transformed current cell value.

f - a function transforming the current cell value.

Returns:

the aggregated measure.

See Also:

LongFunctions

aggregate

public long aggregate(LongLongFunction aggr,
                      LongFunction f,
                      IntArrayList indexList)

Description copied from class: LongMatrix1D

Applies a function to all cells with a given indexes and aggregates the results.

Overrides:

aggregate in class LongMatrix1D

Parameters:

aggr - an aggregation function taking as first argument the current aggregation and as second argument the transformed current cell value.

f - a function transforming the current cell value.

indexList - indexes.

Returns:

the aggregated measure.

See Also:

LongFunctions

aggregate

public long aggregate(LongMatrix1D other,
                      LongLongFunction aggr,
                      LongLongFunction f)

Description copied from class: LongMatrix1D

Applies a function to each corresponding cell of two matrices and aggregates the results. Returns a value v such that v==a(size()) where a(i) == aggr( a(i-1), f(get(i),other.get(i)) ) and terminators are a(1) == f(get(0),other.get(0)), a(0)==Long.NaN.

Example:

   cern.jet.math.Functions F = cern.jet.math.Functions.functions;
   x = 0 1 2 3 
   y = 0 1 2 3 
 
   // Sum( x[i]*y[i] )
   x.aggregate(y, F.plus, F.mult);
   --> 14
 
   // Sum( (x[i]+y[i])ˆ2 )
   x.aggregate(y, F.plus, F.chain(F.square,F.plus));
   --> 56
 
 

For further examples, see the package doc.

Overrides:

aggregate in class LongMatrix1D

aggr - an aggregation function taking as first argument the current aggregation and as second argument the transformed current cell values.

f - a function transforming the current cell values.

Returns:

the aggregated measure.

See Also:

LongFunctions

assign

public LongMatrix1D assign(LongFunction function)

Description copied from class: LongMatrix1D

Assigns the result of a function to each cell; x[i] = function(x[i]). (Iterates downwards from [size()-1] to [0]).

Example:

   // change each cell to its sine
   matrix =   0.5      1.5      2.5       3.5 
   matrix.assign(cern.jet.math.Functions.sin);
   -->
   matrix ==  0.479426 0.997495 0.598472 -0.350783
 
 

For further examples, see the package doc.

Overrides:

assign in class LongMatrix1D

Parameters:

function - a function object taking as argument the current cell's value.

Returns:

this (for convenience only).

See Also:

LongFunctions

assign

public LongMatrix1D assign(LongProcedure cond,
                           LongFunction function)

Description copied from class: LongMatrix1D

Assigns the result of a function to all cells that satisfy a condition.

Overrides:

assign in class LongMatrix1D

Parameters:

cond - a condition.

function - a function object.

Returns:

this (for convenience only).

See Also:

LongFunctions

assign

public LongMatrix1D assign(LongProcedure cond,
                           long value)

Description copied from class: LongMatrix1D

Assigns a value to all cells that satisfy a condition.

Overrides:

assign in class LongMatrix1D

Parameters:

cond - a condition.

value - a value.

Returns:

this (for convenience only).

assign

public LongMatrix1D assign(long value)

Description copied from class: LongMatrix1D

Sets all cells to the state specified by value.

Overrides:

assign in class LongMatrix1D

Parameters:

value - the value to be filled into the cells.

Returns:

this (for convenience only).

assign

public LongMatrix1D assign(long[] values)

Description copied from class: LongMatrix1D

Sets all cells to the state specified by values. values is required to have the same number of cells as the receiver.

The values are copied. So subsequent changes in values are not reflected in the matrix, and vice-versa.

Overrides:

assign in class LongMatrix1D

Parameters:

values - the values to be filled into the cells.

Returns:

this (for convenience only).

assign

public LongMatrix1D assign(int[] values)

Description copied from class: LongMatrix1D

Sets all cells to the state specified by values. values is required to have the same number of cells as the receiver.

The values are copied. So subsequent changes in values are not reflected in the matrix, and vice-versa.

Overrides:

assign in class LongMatrix1D

Parameters:

values - the values to be filled into the cells.

Returns:

this (for convenience only).

assign

public LongMatrix1D assign(LongMatrix1D source)

Description copied from class: LongMatrix1D

Replaces all cell values of the receiver with the values of another matrix. Both matrices must have the same size. If both matrices share the same cells (as is the case if they are views derived from the same matrix) and intersect in an ambiguous way, then replaces as if using an intermediate auxiliary deep copy of other.

Overrides:

assign in class LongMatrix1D

Parameters:

source - the source matrix to copy from (may be identical to the receiver).

Returns:

this (for convenience only).

assign

public LongMatrix1D assign(LongMatrix1D y,
                           LongLongFunction function)

Description copied from class: LongMatrix1D

Assigns the result of a function to each cell; x[i] = function(x[i],y[i]).

Example:

   // assign x[i] = x[i]<sup>y[i]</sup>
   m1 = 0 1 2 3;
   m2 = 0 2 4 6;
   m1.assign(m2, cern.jet.math.Functions.pow);
   -->
   m1 == 1 1 16 729
 
 

For further examples, see the package doc.

Overrides:

assign in class LongMatrix1D

Parameters:

y - the secondary matrix to operate on.

function - a function object taking as first argument the current cell's value of this, and as second argument the current cell's value of y,

Returns:

this (for convenience only).

See Also:

LongFunctions

cardinality

public int cardinality()

Description copied from class: LongMatrix1D

Returns the number of cells having non-zero values; ignores tolerance.

Overrides:

cardinality in class LongMatrix1D

Returns:

the number of cells having non-zero values.

elements

public long[] elements()

Description copied from class: LongMatrix1D

Returns the elements of this matrix.

Specified by:

elements in class LongMatrix1D

Returns:

the elements

getNonZeros

public void getNonZeros(LongArrayList indexList,
                        LongArrayList valueList)

getPositiveValues

public void getPositiveValues(LongArrayList indexList,
                              LongArrayList valueList)

getNegativeValues

public void getNegativeValues(LongArrayList indexList,
                              LongArrayList valueList)

getMaxLocation

public long[] getMaxLocation()

Description copied from class: LongMatrix1D

Return the maximum value of this matrix together with its location

Overrides:

getMaxLocation in class LongMatrix1D

Returns:

{ maximum_value, location };

getMinLocation

public long[] getMinLocation()

Description copied from class: LongMatrix1D

Return the minimum value of this matrix together with its location

Overrides:

getMinLocation in class LongMatrix1D

Returns:

{ minimum_value, location };

getQuick

public long getQuick(int index)

Description copied from class: LongMatrix1D

Returns the matrix cell value at coordinate index.

Provided with invalid parameters this method may return invalid objects without throwing any exception. You should only use this method when you are absolutely sure that the coordinate is within bounds. Precondition (unchecked): index<0 || index>=size().

Specified by:

getQuick in class LongMatrix1D

Parameters:

index - the index of the cell.

Returns:

the value of the specified cell.

like

public LongMatrix1D like(int size)

Description copied from class: LongMatrix1D

Construct and returns a new empty matrix of the same dynamic type as the receiver, having the specified size. For example, if the receiver is an instance of type DenseLongMatrix1D the new matrix must also be of type DenseLongMatrix1D, if the receiver is an instance of type SparseLongMatrix1D the new matrix must also be of type SparseLongMatrix1D, etc. In general, the new matrix should have internal parametrization as similar as possible.

Specified by:

like in class LongMatrix1D

Parameters:

size - the number of cell the matrix shall have.

Returns:

a new empty matrix of the same dynamic type.

like2D

public LongMatrix2D like2D(int rows,
                           int columns)

Description copied from class: LongMatrix1D

Construct and returns a new 2-d matrix of the corresponding dynamic type, entirelly independent of the receiver. For example, if the receiver is an instance of type DenseLongMatrix1D the new matrix must be of type DenseLongMatrix2D, if the receiver is an instance of type SparseLongMatrix1D the new matrix must be of type SparseLongMatrix2D, etc.

Specified by:

like2D in class LongMatrix1D

Parameters:

rows - the number of rows the matrix shall have.

columns - the number of columns the matrix shall have.

Returns:

a new matrix of the corresponding dynamic type.

reshape

public LongMatrix2D reshape(int rows,
                            int columns)

Description copied from class: LongMatrix1D

Returns new LongMatrix2D of size rows x columns whose elements are taken column-wise from this matrix.

Specified by:

reshape in class LongMatrix1D

Parameters:

rows - number of rows

columns - number of columns

Returns:

new 2D matrix with columns being the elements of this matrix.

reshape

public LongMatrix3D reshape(int slices,
                            int rows,
                            int columns)

Description copied from class: LongMatrix1D

Returns new LongMatrix3D of size slices x rows x columns, whose elements are taken column-wise from this matrix.

Specified by:

reshape in class LongMatrix1D

rows - number of rows

columns - number of columns

Returns:

new 2D matrix with columns being the elements of this matrix.

setQuick

public void setQuick(int index,
                     long value)

Description copied from class: LongMatrix1D

Sets the matrix cell at coordinate index to the specified value.

Provided with invalid parameters this method may access illegal indexes without throwing any exception. You should only use this method when you are absolutely sure that the coordinate is within bounds. Precondition (unchecked): index<0 || index>=size().

Specified by:

setQuick in class LongMatrix1D

Parameters:

index - the index of the cell.

value - the value to be filled into the specified cell.

swap

public void swap(LongMatrix1D other)

Description copied from class: LongMatrix1D

Swaps each element this[i] with other[i].

Overrides:

swap in class LongMatrix1D

toArray

public void toArray(long[] values)

Description copied from class: LongMatrix1D

Fills the cell values into the specified 1-dimensional array. The values are copied. So subsequent changes in values are not reflected in the matrix, and vice-versa. After this call returns the array values has the form
for (int i=0; i < size(); i++) values[i] = get(i);

Overrides:

toArray in class LongMatrix1D

zDotProduct

public long zDotProduct(LongMatrix1D y)

Description copied from class: LongMatrix1D

Returns the dot product of two vectors x and y, which is Sum(x[i]*y[i]). Where x == this. Operates on cells at indexes 0 .. Math.min(size(),y.size()).

Overrides:

zDotProduct in class LongMatrix1D

Parameters:

y - the second vector.

Returns:

the sum of products.

zDotProduct

public long zDotProduct(LongMatrix1D y,
                        int from,
                        int length)

Description copied from class: LongMatrix1D

Returns the dot product of two vectors x and y, which is Sum(x[i]*y[i]). Where x == this. Operates on cells at indexes from .. Min(size(),y.size(),from+length)-1.

Overrides:

zDotProduct in class LongMatrix1D

Parameters:

y - the second vector.

from - the first index to be considered.

length - the number of cells to be considered.

Returns:

the sum of products; zero if from<0 || length<0.

zSum

public long zSum()

Description copied from class: LongMatrix1D

Returns the sum of all cells; Sum( x[i] ).

Overrides:

zSum in class LongMatrix1D

Returns:

the sum.

index

public long index(int rank)

Description copied from class: AbstractMatrix1D

Returns the position of the element with the given relative rank within the (virtual or non-virtual) internal 1-dimensional array. You may want to override this method for performance.

Overrides:

index in class AbstractMatrix1D

Parameters:

rank - the rank of the element.