/*******************************************************************************
 * Copyright (c) 2010 Haifeng Li
 *   
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *  
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *******************************************************************************/
package smile.manifold;

import smile.data.parser.DelimitedTextParser;
import smile.data.AttributeDataset;
import org.junit.After;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.BeforeClass;
import org.junit.Test;
import smile.math.Math;
import smile.math.matrix.Matrix;

import static org.junit.Assert.*;

/**
 *
 * @author Haifeng Li
 */
public class LaplacianEigenmapTest {

    AttributeDataset swissroll;

    public LaplacianEigenmapTest() {
        DelimitedTextParser parser = new DelimitedTextParser();
        parser.setDelimiter("\t");

        try {
            swissroll = parser.parse("Swissroll", smile.data.parser.IOUtils.getTestDataFile("manifold/swissroll.txt"));
        } catch (Exception e) {
            System.err.println(e);
        }
    }

    @BeforeClass
    public static void setUpClass() throws Exception {
    }

    @AfterClass
    public static void tearDownClass() throws Exception {
    }

    @Before
    public void setUp() {
    }

    @After
    public void tearDown() {
    }

    /**
     * Test of learn method, of class LaplacianEigenmap.
     */
    @Test
    public void testLearn() {
        System.out.println("learn");

        double[][] points = {
                { 0.0150,  0.0125},
                {-0.0186,  0.0120},
                { 0.0434, -0.0024},
                { 0.0332,  0.0175},
                {-0.0110,  0.0075},
                { 0.0096,  0.0215},
                {-0.0201,  0.0163},
                { 0.0347, -0.0175},
                { 0.0075, -0.0239},
                { 0.0388, -0.0354},
                { 0.0410,  0.0466},
                {-0.0329, -0.0094},
                { 0.0344,  0.0499},
                {-0.0411,  0.0123},
                {-0.0317,  0.0254},
                {-0.0198, -0.0092},
                {-0.0339,  0.0222},
                { 0.0358, -0.0073},
                {-0.0433, -0.0106},
                {-0.0459,  0.0274},
                {-0.0035, -0.0188},
                {-0.0459,  0.0287},
                {-0.0468,  0.0341},
                {-0.0233, -0.0168},
                { 0.0232,  0.0137},
                { 0.0395,  0.0569},
                {-0.0222, -0.0397},
                {-0.0260,  0.0221},
                {-0.0211,  0.0034},
                { 0.0325,  0.0457},
                { 0.0298,  0.0372},
                { 0.0318,  0.0088},
                {-0.0187,  0.0100},
                { 0.0344,  0.0231},
                {-0.0448,  0.0048},
                { 0.0399, -0.0331},
                { 0.0297, -0.0421},
                { 0.0237, -0.0391},
                { 0.0236,  0.0319},
                {-0.0305, -0.0312},
                {-0.0011, -0.0530},
                {-0.0031, -0.0328},
                {-0.0399,  0.0122},
                { 0.0163, -0.0073},
                { 0.0369, -0.0367},
                {-0.0053, -0.0444},
                { 0.0041, -0.0282},
                {-0.0471,  0.0332},
                { 0.0239,  0.0114},
                {-0.0456,  0.0233},
                {-0.0221, -0.0025},
                {-0.0126, -0.0112},
                { 0.0162, -0.0391},
                {-0.0400,  0.0106},
                { 0.0137, -0.0044},
                {-0.0213, -0.0254},
                { 0.0244,  0.0356},
                { 0.0393,  0.0599},
                { 0.0205,  0.0265},
                {-0.0312, -0.0071},
                {-0.0104, -0.0502},
                {-0.0466,  0.0285},
                {-0.0474,  0.0279},
                {-0.0254, -0.0141},
                {-0.0171,  0.0062},
                { 0.0275, -0.0473},
                {-0.0474,  0.0324},
                { 0.0383, -0.0383},
                { 0.0252, -0.0480},
                { 0.0151,  0.0188},
                {-0.0111,  0.0162},
                { 0.0016,  0.0175},
                {-0.0124,  0.0057},
                { 0.0408,  0.0443},
                { 0.0076,  0.0198},
                { 0.0426,  0.0116},
                { 0.0402,  0.0047},
                {-0.0397,  0.0090},
                { 0.0373, -0.0348},
                {-0.0413, -0.0140},
                { 0.0222,  0.0333},
                { 0.0307, -0.0142},
                { 0.0246,  0.0392},
                { 0.0162, -0.0391},
                {-0.0036, -0.0344},
                { 0.0293, -0.0152},
                {-0.0234, -0.0148},
                {-0.0107, -0.0500},
                { 0.0366, -0.0171},
                { 0.0328,  0.0152},
                {-0.0434, -0.0097},
                {-0.0104, -0.0147},
                { 0.0333,  0.0215},
                { 0.0126, -0.0016},
                { 0.0427,  0.0014},
                { 0.0387,  0.0623},
                {-0.0436,  0.0133},
                { 0.0238, -0.0413},
                {-0.0470,  0.0341},
                { 0.0232,  0.0292},
                { 0.0431, -0.0006},
                {-0.0101, -0.0440},
                {-0.0474,  0.0334},
                {-0.0250,  0.0221},
                {-0.0415,  0.0266},
                {-0.0313,  0.0250},
                {-0.0180,  0.0135},
                { 0.0230, -0.0442},
                { 0.0383, -0.0351},
                {-0.0238,  0.0041},
                {-0.0305, -0.0073},
                { 0.0445,  0.0120},
                {-0.0053, -0.0403},
                { 0.0317, -0.0088},
                { 0.0141,  0.0115},
                {-0.0139, -0.0423},
                { 0.0075,  0.0228},
                {-0.0250, -0.0302},
                { 0.0283, -0.0154},
                { 0.0398, -0.0305},
                { 0.0313, -0.0405},
                { 0.0389, -0.0393},
                { 0.0295,  0.0363},
                { 0.0248,  0.0392},
                {-0.0053, -0.0403},
                {-0.0073,  0.0069},
                { 0.0214, -0.0229},
                { 0.0174,  0.0216},
                { 0.0400,  0.0365},
                {-0.0423, -0.0093},
                { 0.0218,  0.0357},
                { 0.0442,  0.0818},
                { 0.0032, -0.0487},
                { 0.0215,  0.0354},
                { 0.0153, -0.0053},
                { 0.0311,  0.0359},
                { 0.0396, -0.0388},
                { 0.0415, -0.0228},
                {-0.0250, -0.0295},
                { 0.0409, -0.0324},
                {-0.0036, -0.0397},
                {-0.0421,  0.0267},
                {-0.0425, -0.0094},
                { 0.0064,  0.0225},
                { 0.0174, -0.0500},
                {-0.0476,  0.0343},
                {-0.0071,  0.0036},
                {-0.0252, -0.0359},
                { 0.0097, -0.0494},
                { 0.0408,  0.0008},
                {-0.0449,  0.0130},
                { 0.0177, -0.0382},
                { 0.0444,  0.0093},
                { 0.0131,  0.0213},
                { 0.0267, -0.0177},
                {-0.0361,  0.0202},
                { 0.0362, -0.0029},
                { 0.0255,  0.0399},
                { 0.0394, -0.0329},
                {-0.0007,  0.0058},
                {-0.0393, -0.0003},
                { 0.0395, -0.0390},
                {-0.0454,  0.0200},
                { 0.0228,  0.0327},
                { 0.0242,  0.0388},
                {-0.0181,  0.0130},
                { 0.0214,  0.0165},
                {-0.0432, -0.0068},
                {-0.0293, -0.0072},
                { 0.0402,  0.0678},
                {-0.0365, -0.0221},
                {-0.0079,  0.0138},
                {-0.0315,  0.0250},
                {-0.0404, -0.0125},
                { 0.0399,  0.0023},
                { 0.0379, -0.0080},
                { 0.0049,  0.0175},
                { 0.0042, -0.0505},
                {-0.0367,  0.0192},
                { 0.0050,  0.0185},
                {-0.0110,  0.0056},
                {-0.0348, -0.0109},
                {-0.0031, -0.0375},
                { 0.0215,  0.0325},
                { 0.0189, -0.0132},
                { 0.0356,  0.0311},
                {-0.0194, -0.0408},
                { 0.0436, -0.0013},
                {-0.0436, -0.0052},
                {-0.0319, -0.0294},
                { 0.0415,  0.0459},
                { 0.0010, -0.0093},
                { 0.0287,  0.0315},
                {-0.0305, -0.0312},
                { 0.0385,  0.0605},
                { 0.0368, -0.0238},
                { 0.0421,  0.0585},
                { 0.0117,  0.0191},
                { 0.0033,  0.0157},
                { 0.0242,  0.0386},
                { 0.0259,  0.0394},
                {-0.0434,  0.0327},
                { 0.0133, -0.0003},
                {-0.0484,  0.0344},
                { 0.0409, -0.0324},
                { 0.0390, -0.0346},
                {-0.0013, -0.0159},
                {-0.0228, -0.0345},
                { 0.0006,  0.0173},
                {-0.0210, -0.0406},
                {-0.0232, -0.0159},
                {-0.0473,  0.0265},
                {-0.0326, -0.0116},
                {-0.0470,  0.0251},
                { 0.0352, -0.0346},
                {-0.0436, -0.0086},
                {-0.0286, -0.0238},
                {-0.0270,  0.0082},
                {-0.0423, -0.0130},
                { 0.0386, -0.0279},
                { 0.0009, -0.0528},
                { 0.0446,  0.0161},
                { 0.0058, -0.0265},
                { 0.0447,  0.0149},
                { 0.0036, -0.0519},
                {-0.0026, -0.0400},
                { 0.0432, -0.0053},
                {-0.0463,  0.0282},
                {-0.0390,  0.0276},
                { 0.0236, -0.0461},
                { 0.0091, -0.0480},
                {-0.0013,  0.0188},
                { 0.0179, -0.0386},
                { 0.0439,  0.0077},
                { 0.0408,  0.0697},
                { 0.0400,  0.0022},
                { 0.0238, -0.0486},
                { 0.0313, -0.0441},
                {-0.0367, -0.0097},
                { 0.0332,  0.0429},
                { 0.0162, -0.0067},
                { 0.0436, -0.0002},
                { 0.0351,  0.0294},
                { 0.0169, -0.0026},
                {-0.0338,  0.0192},
                { 0.0427,  0.0014},
                {-0.0405,  0.0229},
                {-0.0226, -0.0014},
                { 0.0400,  0.0591},
                {-0.0448,  0.0337},
                { 0.0410,  0.0616},
                { 0.0055,  0.0178},
                {-0.0044, -0.0130},
                {-0.0437, -0.0076},
                {-0.0455,  0.0337},
                { 0.0263, -0.0471},
                {-0.0182, -0.0421},
                {-0.0452,  0.0200},
                { 0.0020,  0.0168},
                {-0.0470,  0.0304},
                { 0.0390,  0.0007},
                { 0.0433, -0.0030},
                {-0.0189, -0.0432},
                {-0.0463,  0.0275},
                { 0.0342, -0.0380},
                { 0.0154,  0.0001},
                {-0.0427, -0.0086},
                { 0.0408,  0.0697},
                {-0.0289, -0.0328},
                {-0.0358,  0.0195},
                { 0.0060,  0.0223},
                { 0.0391, -0.0299},
                {-0.0483,  0.0338},
                { 0.0409, -0.0324},
                { 0.0345, -0.0377},
                { 0.0393, -0.0390},
                { 0.0061, -0.0046},
                {-0.0255, -0.0295},
                {-0.0232, -0.0265},
                {-0.0436, -0.0016},
                { 0.0142,  0.0010},
                { 0.0424,  0.0638},
                {-0.0316, -0.0075},
                { 0.0283,  0.0166},
                {-0.0203, -0.0076},
                {-0.0476,  0.0318},
                { 0.0246,  0.0124},
                { 0.0402,  0.0677},
                { 0.0248,  0.0148},
                { 0.0204,  0.0342},
                { 0.0213, -0.0221},
                {-0.0159,  0.0056},
                {-0.0383, -0.0081},
                { 0.0027, -0.0489},
                {-0.0158, -0.0110},
                { 0.0156,  0.0255},
                {-0.0086, -0.0099},
                {-0.0344,  0.0197},
                { 0.0215,  0.0354},
                { 0.0312,  0.0416},
                {-0.0281,  0.0236},
                { 0.0270, -0.0469},
                { 0.0118, -0.0134},
                {-0.0302,  0.0247},
                { 0.0039,  0.0214},
                {-0.0459,  0.0265},
                {-0.0397, -0.0128},
                {-0.0452,  0.0339},
                { 0.0376, -0.0308},
                { 0.0098,  0.0199},
                { 0.0110,  0.0150},
                { 0.0238,  0.0384},
                {-0.0101, -0.0504},
                {-0.0405,  0.0231},
                { 0.0446,  0.0141},
                { 0.0046, -0.0315},
                { 0.0273, -0.0475},
                { 0.0263,  0.0328},
                {-0.0381, -0.0007},
                { 0.0359, -0.0135},
                { 0.0054, -0.0324},
                { 0.0189, -0.0399},
                {-0.0424, -0.0100},
                { 0.0128,  0.0257},
                { 0.0166,  0.0235},
                { 0.0355, -0.0117},
                {-0.0327,  0.0258},
                {-0.0453,  0.0210},
                { 0.0268,  0.0374},
                {-0.0309, -0.0307},
                { 0.0067, -0.0512},
                {-0.0432, -0.0064},
                { 0.0404, -0.0283},
                { 0.0329,  0.0460},
                {-0.0083, -0.0509},
                { 0.0398, -0.0301},
                {-0.0105, -0.0427},
                {-0.0188, -0.0119},
                {-0.0443, -0.0005},
                { 0.0212, -0.0487},
                {-0.0318,  0.0247},
                {-0.0452,  0.0242},
                { 0.0004, -0.0417},
                { 0.0339,  0.0292},
                { 0.0387, -0.0392},
                { 0.0146,  0.0092},
                {-0.0087, -0.0511},
                { 0.0217, -0.0471},
                {-0.0223, -0.0202},
                { 0.0033, -0.0492},
                {-0.0061, -0.0500},
                {-0.0446,  0.0034},
                { 0.0342, -0.0406},
                {-0.0119, -0.0437},
                { 0.0225,  0.0313},
                { 0.0443,  0.0825},
                { 0.0002, -0.0208},
                {-0.0015,  0.0013},
                { 0.0247,  0.0340},
                { 0.0153, -0.0505},
                { 0.0248, -0.0448},
                {-0.0470,  0.0284},
                {-0.0136,  0.0059},
                {-0.0008, -0.0239},
                {-0.0319, -0.0078},
                {-0.0298, -0.0320},
                {-0.0042, -0.0391},
                {-0.0467,  0.0343},
                {-0.0457,  0.0225},
                {-0.0465,  0.0294},
                {-0.0483,  0.0344},
                { 0.0078,  0.0190},
                {-0.0179, -0.0412},
                {-0.0430, -0.0117},
                {-0.0391,  0.0040},
                { 0.0013,  0.0166},
                { 0.0287,  0.0355},
                { 0.0277, -0.0432},
                { 0.0408, -0.0304},
                { 0.0335, -0.0378},
                { 0.0443,  0.0820},
                { 0.0128, -0.0068},
                { 0.0410,  0.0424},
                { 0.0198, -0.0493},
                {-0.0202,  0.0073},
                { 0.0441,  0.0798},
                { 0.0118,  0.0188},
                {-0.0408,  0.0214},
                { 0.0272, -0.0474},
                { 0.0342,  0.0304},
                {-0.0284, -0.0334},
                { 0.0223,  0.0319},
                {-0.0397,  0.0291},
                { 0.0440,  0.0048},
                { 0.0403,  0.0472},
                {-0.0358,  0.0195},
                { 0.0294, -0.0183},
                {-0.0024,  0.0011},
                { 0.0406,  0.0692},
                {-0.0294,  0.0244},
                {-0.0329, -0.0094},
                { 0.0100,  0.0234},
                { 0.0172, -0.0056},
                { 0.0371, -0.0213},
                { 0.0375, -0.0393},
                {-0.0316,  0.0152},
                {-0.0369, -0.0209},
                {-0.0309, -0.0307},
                {-0.0175, -0.0422},
                {-0.0341,  0.0188},
                {-0.0339,  0.0264},
                { 0.0289,  0.0067},
                {-0.0408,  0.0004},
                {-0.0086, -0.0509},
                { 0.0141,  0.0063},
                {-0.0090, -0.0500},
                { 0.0377, -0.0391},
                {-0.0446,  0.0330},
                { 0.0103,  0.0211},
                { 0.0282, -0.0134},
                {-0.0140, -0.0386},
                {-0.0410,  0.0044},
                { 0.0066,  0.0224},
                { 0.0308,  0.0039},
                { 0.0220, -0.0203},
                { 0.0398,  0.0662},
                {-0.0112, -0.0428},
                {-0.0337, -0.0266},
                {-0.0071, -0.0079},
                {-0.0071, -0.0062},
                { 0.0226,  0.0324},
                { 0.0383, -0.0372},
                {-0.0477,  0.0322},
                {-0.0391, -0.0156},
                { 0.0061, -0.0463},
                {-0.0275,  0.0233},
                { 0.0202, -0.0295},
                {-0.0439, -0.0059},
                {-0.0089, -0.0509},
                {-0.0175,  0.0183},
                {-0.0102, -0.0497},
                {-0.0484,  0.0344},
                {-0.0329,  0.0254},
                { 0.0424,  0.0638},
                {-0.0229, -0.0392},
                { 0.0447,  0.0153},
                {-0.0250, -0.0304},
                {-0.0011, -0.0496},
                { 0.0238, -0.0451},
                { 0.0409, -0.0320},
                { 0.0446,  0.0155},
                {-0.0026, -0.0322},
                {-0.0394, -0.0176},
                {-0.0440, -0.0022},
                {-0.0389, -0.0072},
                {-0.0392, -0.0162},
                {-0.0353,  0.0239},
                { 0.0213, -0.0221},
                {-0.0227, -0.0164},
                { 0.0284,  0.0368},
                { 0.0412, -0.0233},
                { 0.0286,  0.0309},
                { 0.0225,  0.0332},
                {-0.0167, -0.0452},
                {-0.0302, -0.0072},
                {-0.0244, -0.0067},
                { 0.0379, -0.0371},
                { 0.0217, -0.0241},
                {-0.0161,  0.0157},
                {-0.0328, -0.0280},
                { 0.0259, -0.0431},
                { 0.0397, -0.0388},
                { 0.0222,  0.0139},
                { 0.0235, -0.0416},
                { 0.0353, -0.0365},
                { 0.0408,  0.0473},
                {-0.0011, -0.0009},
                { 0.0244, -0.0428},
                {-0.0228,  0.0029},
                {-0.0249,  0.0053},
                { 0.0294,  0.0352},
                {-0.0395, -0.0096},
                { 0.0399, -0.0385},
                { 0.0007, -0.0035},
                {-0.0089, -0.0089},
                { 0.0300,  0.0378},
                { 0.0442,  0.0819},
                {-0.0405,  0.0123},
                { 0.0435,  0.0194},
                {-0.0163,  0.0175},
                { 0.0291,  0.0371},
                { 0.0010, -0.0030},
                {-0.0186,  0.0120},
                {-0.0183, -0.0429},
                {-0.0027, -0.0411},
                { 0.0075,  0.0220},
                {-0.0376,  0.0000},
                {-0.0361,  0.0192},
                { 0.0360, -0.0214},
                { 0.0217, -0.0490},
                {-0.0412, -0.0026},
                {-0.0430, -0.0115},
                { 0.0186, -0.0483},
                { 0.0016, -0.0234},
                { 0.0432,  0.0147},
                { 0.0422,  0.0642},
                { 0.0279,  0.0258},
                { 0.0442,  0.0168},
                { 0.0310,  0.0083},
                {-0.0473,  0.0341},
                { 0.0193,  0.0017},
                { 0.0016, -0.0487},
                {-0.0158,  0.0174},
                { 0.0195, -0.0497},
                { 0.0105, -0.0498},
                { 0.0015, -0.0533},
                {-0.0404, -0.0161},
                {-0.0428, -0.0122},
                { 0.0246,  0.0392},
                { 0.0343,  0.0270},
                { 0.0442,  0.0078},
                { 0.0235,  0.0138},
                { 0.0443,  0.0825},
                {-0.0077, -0.0059},
                {-0.0475,  0.0285},
                { 0.0289, -0.0464},
                {-0.0446,  0.0272},
                {-0.0301, -0.0080},
                {-0.0430,  0.0253},
                {-0.0356, -0.0236},
                { 0.0440,  0.0047},
                { 0.0132, -0.0489},
                {-0.0386,  0.0283},
                { 0.0358, -0.0406},
                { 0.0398, -0.0287},
                {-0.0435,  0.0112},
                { 0.0401, -0.0379},
                {-0.0366, -0.0095},
                {-0.0269, -0.0258},
                { 0.0063, -0.0247},
                {-0.0452,  0.0115},
                {-0.0243,  0.0031},
                {-0.0437, -0.0078},
                {-0.0229, -0.0253},
                { 0.0401,  0.0421},
                {-0.0043, -0.0290},
                {-0.0384,  0.0250},
                {-0.0475,  0.0327},
                {-0.0308,  0.0241},
                { 0.0396, -0.0381},
                {-0.0165, -0.0106},
                {-0.0431,  0.0124},
                { 0.0391, -0.0299},
                {-0.0463,  0.0281},
                { 0.0282, -0.0134},
                {-0.0480,  0.0320},
                {-0.0385, -0.0184},
                {-0.0482,  0.0344},
                {-0.0162,  0.0178},
                {-0.0476,  0.0292},
                { 0.0382, -0.0366},
                {-0.0436, -0.0060},
                {-0.0036,  0.0032},
                {-0.0413, -0.0143},
                { 0.0414,  0.0183},
                {-0.0465,  0.0274},
                { 0.0027,  0.0171},
                { 0.0025,  0.0141},
                { 0.0418, -0.0204},
                {-0.0033, -0.0350},
                {-0.0009, -0.0127},
                { 0.0256, -0.0390},
                { 0.0193,  0.0170},
                {-0.0451,  0.0338},
                { 0.0438,  0.0795},
                { 0.0420,  0.0613},
                { 0.0344, -0.0355},
                {-0.0346, -0.0093},
                { 0.0001, -0.0488},
                {-0.0038, -0.0378},
                {-0.0036, -0.0352},
                {-0.0020,  0.0169},
                {-0.0393, -0.0068},
                { 0.0335, -0.0423},
                { 0.0177,  0.0014},
                {-0.0351,  0.0198},
                {-0.0364, -0.0073},
                { 0.0023,  0.0202},
                {-0.0235, -0.0383},
                { 0.0438,  0.0010},
                {-0.0449,  0.0065},
                { 0.0174, -0.0377},
                {-0.0066, -0.0097},
                { 0.0443,  0.0817},
                {-0.0106, -0.0429},
                {-0.0464,  0.0343},
                {-0.0459,  0.0191},
                { 0.0053,  0.0220},
                { 0.0377,  0.0338},
                {-0.0400, -0.0036},
                {-0.0479,  0.0311},
                {-0.0385,  0.0176},
                { 0.0438,  0.0114},
                {-0.0469,  0.0315},
                {-0.0288,  0.0240},
                { 0.0443,  0.0825},
                { 0.0223,  0.0310},
                {-0.0065, -0.0466},
                { 0.0440,  0.0186},
                {-0.0454,  0.0179},
                { 0.0345, -0.0412},
                {-0.0227, -0.0383},
                { 0.0423, -0.0147},
                { 0.0431, -0.0063},
                {-0.0370, -0.0088},
                { 0.0284,  0.0329},
                {-0.0025, -0.0403},
                {-0.0409,  0.0242},
                {-0.0433, -0.0042},
                {-0.0275, -0.0059},
                {-0.0216, -0.0160},
                {-0.0049,  0.0151},
                { 0.0096, -0.0183},
                { 0.0039, -0.0485},
                { 0.0045, -0.0527},
                { 0.0430,  0.0187},
                { 0.0362, -0.0083},
                {-0.0241,  0.0026},
                {-0.0445,  0.0092},
                { 0.0387,  0.0623},
                { 0.0023, -0.0532},
                {-0.0362,  0.0190},
                {-0.0246, -0.0321},
                { 0.0019, -0.0475},
                {-0.0230, -0.0173},
                { 0.0402, -0.0307},
                { 0.0014,  0.0051},
                {-0.0481,  0.0320},
                {-0.0396, -0.0061},
                { 0.0149, -0.0020},
                { 0.0406, -0.0350},
                { 0.0004, -0.0175},
                {-0.0329,  0.0254},
                {-0.0257, -0.0287},
                { 0.0291, -0.0457},
                {-0.0314, -0.0093},
                { 0.0414,  0.0476},
                { 0.0365, -0.0346},
                { 0.0443,  0.0819},
                { 0.0400,  0.0022},
                {-0.0439,  0.0331},
                {-0.0397, -0.0124},
                { 0.0143,  0.0270},
                {-0.0429, -0.0118},
                { 0.0437,  0.0161},
                { 0.0307,  0.0047},
                {-0.0178,  0.0178},
                {-0.0438, -0.0045},
                { 0.0202,  0.0286},
                { 0.0362, -0.0080},
                {-0.0446,  0.0336},
                { 0.0164,  0.0149},
                {-0.0012,  0.0176},
                {-0.0250, -0.0362},
                { 0.0286, -0.0439},
                { 0.0141, -0.0028},
                {-0.0376,  0.0246},
                { 0.0006,  0.0182},
                { 0.0230, -0.0218},
                { 0.0394,  0.0630},
                { 0.0397,  0.0009},
                {-0.0458,  0.0341},
                { 0.0097,  0.0233},
                {-0.0064, -0.0016},
                { 0.0395,  0.0016},
                {-0.0401,  0.0174},
                { 0.0442,  0.0817},
                {-0.0115, -0.0424},
                {-0.0225, -0.0188},
                { 0.0370, -0.0401},
                { 0.0424, -0.0137},
                {-0.0483,  0.0344},
                { 0.0307, -0.0142},
                {-0.0334, -0.0050},
                { 0.0405,  0.0688},
                { 0.0398,  0.0602},
                {-0.0483,  0.0338},
                { 0.0030, -0.0351},
                {-0.0430, -0.0117},
                { 0.0165, -0.0067},
                { 0.0425,  0.0698},
                { 0.0257,  0.0140},
                { 0.0357, -0.0093},
                {-0.0399, -0.0166},
                { 0.0441,  0.0798},
                { 0.0299,  0.0390},
                { 0.0302,  0.0378},
                {-0.0462,  0.0310},
                { 0.0397,  0.0013},
                { 0.0237, -0.0391},
                {-0.0257, -0.0284},
                { 0.0138, -0.0081},
                { 0.0266, -0.0430},
                { 0.0112,  0.0194},
                { 0.0435,  0.0123},
                {-0.0073, -0.0424},
                {-0.0203,  0.0053},
                {-0.0407,  0.0234},
                { 0.0408, -0.0283},
                { 0.0271, -0.0476},
                {-0.0232,  0.0045},
                {-0.0393, -0.0068},
                { 0.0313,  0.0456},
                {-0.0044,  0.0009},
                { 0.0424,  0.0652},
                {-0.0203, -0.0415},
                {-0.0234, -0.0164},
                {-0.0202, -0.0419},
                {-0.0420,  0.0277},
                {-0.0402,  0.0112},
                {-0.0224, -0.0221},
                {-0.0091, -0.0438},
                { 0.0183, -0.0440},
                {-0.0061, -0.0517},
                {-0.0421, -0.0112},
                { 0.0292,  0.0180},
                { 0.0228,  0.0370},
                { 0.0288, -0.0428},
                { 0.0381, -0.0320},
                {-0.0130, -0.0484},
                {-0.0313,  0.0250},
                {-0.0224, -0.0054},
                { 0.0395,  0.0601},
                {-0.0117, -0.0431},
                {-0.0484,  0.0344},
                { 0.0297,  0.0111},
                {-0.0432, -0.0113},
                { 0.0395, -0.0390},
                {-0.0383, -0.0095},
                { 0.0250,  0.0110},
                { 0.0012, -0.0532},
                {-0.0266,  0.0225},
                { 0.0191, -0.0413},
                { 0.0267,  0.0318},
                {-0.0463,  0.0283},
                {-0.0466,  0.0286},
                { 0.0220,  0.0349},
                {-0.0131,  0.0056},
                { 0.0366,  0.0536},
                { 0.0446,  0.0160},
                { 0.0442,  0.0816},
                { 0.0437,  0.0161},
                { 0.0045, -0.0413},
                {-0.0425,  0.0083},
                { 0.0141,  0.0115},
                {-0.0175,  0.0185},
                {-0.0315, -0.0075},
                {-0.0008, -0.0187},
                { 0.0283, -0.0470},
                { 0.0265, -0.0150},
                { 0.0265,  0.0101},
                { 0.0284, -0.0468},
                { 0.0031, -0.0243},
                { 0.0175, -0.0500},
                { 0.0362, -0.0117},
                {-0.0378,  0.0282},
                {-0.0438, -0.0062},
                {-0.0329,  0.0171},
                {-0.0437, -0.0056},
                { 0.0130,  0.0158},
                { 0.0057, -0.0491},
                { 0.0402, -0.0371},
                { 0.0442,  0.0078},
                { 0.0436,  0.0788},
                {-0.0042,  0.0166},
                {-0.0423, -0.0095},
                {-0.0456,  0.0208},
                { 0.0351, -0.0304},
                { 0.0241, -0.0441},
                { 0.0445,  0.0163},
                {-0.0035, -0.0339},
                { 0.0361,  0.0553},
                { 0.0401, -0.0379},
                {-0.0446,  0.0336},
                {-0.0449,  0.0202},
                { 0.0294,  0.0347},
                { 0.0353, -0.0072},
                { 0.0339, -0.0068},
                {-0.0478,  0.0304},
                {-0.0430,  0.0141},
                { 0.0285,  0.0331},
                {-0.0311, -0.0075},
                {-0.0341,  0.0174},
                {-0.0200, -0.0407},
                { 0.0354, -0.0274},
                {-0.0120,  0.0057},
                {-0.0025, -0.0157},
                {-0.0391,  0.0253},
                { 0.0223,  0.0308},
                { 0.0042, -0.0296},
                {-0.0015, -0.0481},
                { 0.0111, -0.0499},
                {-0.0019,  0.0026},
                { 0.0349, -0.0353},
                {-0.0402, -0.0036},
                {-0.0451,  0.0087},
                { 0.0430,  0.0023},
                {-0.0005, -0.0000},
                {-0.0250, -0.0284},
                {-0.0346,  0.0206},
                {-0.0008, -0.0531},
                { 0.0218, -0.0484},
                {-0.0450,  0.0077},
                {-0.0362, -0.0070},
                {-0.0406,  0.0221},
                { 0.0069, -0.0466},
                { 0.0318,  0.0014},
                {-0.0042, -0.0383},
                { 0.0087,  0.0235},
                {-0.0037, -0.0407},
                {-0.0372,  0.0013},
                {-0.0394,  0.0261},
                {-0.0358, -0.0093},
                { 0.0226,  0.0369},
                { 0.0020, -0.0533},
                { 0.0358, -0.0406},
                { 0.0216,  0.0346},
                { 0.0400,  0.0365},
                { 0.0178, -0.0397},
                {-0.0346, -0.0093},
                {-0.0403,  0.0253},
                {-0.0394,  0.0078},
                { 0.0109,  0.0182},
                { 0.0276,  0.0218},
                {-0.0029, -0.0483},
                {-0.0459,  0.0341},
                {-0.0354, -0.0117},
                {-0.0403,  0.0272},
                {-0.0349,  0.0268},
                {-0.0475,  0.0320},
                { 0.0217,  0.0127},
                { 0.0348, -0.0385},
                { 0.0422,  0.0642},
                { 0.0001, -0.0488},
                {-0.0004, -0.0032},
                { 0.0360, -0.0197},
                { 0.0405,  0.0688},
                {-0.0294,  0.0242},
                { 0.0089, -0.0244},
                {-0.0322, -0.0086},
                {-0.0018, -0.0397},
                {-0.0007,  0.0170},
                { 0.0312,  0.0147},
                {-0.0325, -0.0063},
                { 0.0446,  0.0139},
                { 0.0411, -0.0304},
                {-0.0476,  0.0303},
                { 0.0048, -0.0264},
                {-0.0401,  0.0105},
                {-0.0402,  0.0108},
                {-0.0408,  0.0004},
                {-0.0136,  0.0066},
                {-0.0182, -0.0421},
                { 0.0246,  0.0390},
                {-0.0237, -0.0022},
                {-0.0152, -0.0115},
                {-0.0362,  0.0229},
                { 0.0408,  0.0473},
                { 0.0171, -0.0387},
                {-0.0439, -0.0057},
                {-0.0224, -0.0102},
                {-0.0435, -0.0092},
                { 0.0236,  0.0099},
                {-0.0230,  0.0024},
                {-0.0137, -0.0479},
                { 0.0233, -0.0476},
                { 0.0440,  0.0047},
                {-0.0107, -0.0460},
                { 0.0430, -0.0069},
                { 0.0228, -0.0293},
                {-0.0455,  0.0222},
                { 0.0380,  0.0588},
                { 0.0018, -0.0262},
                { 0.0341,  0.0117},
                { 0.0311,  0.0407},
                {-0.0459,  0.0170},
                { 0.0409, -0.0333},
                {-0.0442,  0.0161},
                {-0.0407,  0.0266},
                {-0.0463,  0.0272},
                {-0.0091,  0.0030},
                {-0.0400,  0.0213},
                { 0.0446,  0.0155},
                { 0.0427,  0.0014},
                { 0.0119,  0.0231},
                { 0.0218, -0.0391},
                { 0.0406,  0.0542},
                {-0.0471,  0.0331},
                {-0.0240, -0.0027},
                {-0.0150, -0.0430},
                {-0.0465,  0.0296},
                { 0.0401, -0.0379},
                {-0.0451,  0.0099},
                { 0.0152, -0.0007},
                {-0.0036,  0.0032},
                { 0.0190, -0.0406},
                {-0.0481,  0.0324},
                { 0.0345,  0.0313},
                {-0.0450,  0.0338},
                { 0.0286, -0.0024},
                { 0.0033, -0.0527},
                { 0.0398, -0.0284},
                { 0.0423,  0.0342},
                { 0.0247, -0.0472},
                {-0.0439,  0.0331},
                {-0.0224, -0.0054},
                {-0.0426, -0.0123},
                {-0.0356,  0.0206},
                {-0.0163,  0.0115},
                { 0.0138,  0.0214},
                { 0.0228, -0.0466},
                { 0.0368, -0.0018},
                {-0.0281,  0.0236},
                { 0.0227, -0.0486},
                {-0.0294,  0.0244},
                {-0.0406,  0.0302},
                { 0.0431,  0.0012},
                { 0.0162, -0.0371},
                {-0.0247, -0.0283},
                { 0.0419,  0.0726},
                { 0.0405,  0.0049},
                { 0.0345,  0.0280},
                {-0.0138,  0.0177},
                { 0.0011, -0.0077},
                {-0.0396,  0.0238},
                {-0.0126, -0.0112},
                { 0.0429, -0.0090},
                { 0.0323, -0.0006},
                {-0.0386, -0.0188},
                { 0.0218,  0.0084},
                { 0.0031, -0.0470},
                {-0.0402,  0.0144},
                { 0.0142, -0.0501},
                { 0.0333, -0.0408},
                { 0.0144,  0.0065},
                {-0.0454,  0.0268},
                { 0.0261, -0.0430},
                { 0.0177, -0.0044},
                { 0.0427,  0.0671},
                {-0.0213, -0.0254},
                { 0.0077,  0.0229},
                { 0.0311, -0.0153},
                {-0.0171,  0.0167},
                { 0.0442,  0.0820},
                { 0.0385,  0.0368},
                { 0.0252,  0.0386},
                {-0.0191, -0.0418},
                {-0.0147,  0.0168},
                { 0.0204,  0.0048},
                {-0.0417, -0.0140},
                {-0.0471,  0.0341},
                {-0.0436, -0.0071},
                { 0.0051,  0.0219},
                {-0.0256, -0.0310},
                { 0.0396,  0.0585},
                {-0.0437,  0.0277},
                { 0.0195,  0.0330},
                {-0.0391, -0.0156},
                {-0.0416, -0.0107},
                {-0.0378,  0.0282},
                { 0.0298, -0.0143},
                {-0.0086, -0.0428},
                { 0.0415,  0.0459},
                { 0.0443,  0.0819},
                {-0.0130, -0.0485},
                {-0.0063, -0.0519},
                { 0.0255, -0.0433},
                { 0.0327, -0.0127},
                {-0.0237,  0.0045},
                {-0.0435, -0.0062},
                {-0.0399, -0.0166},
                { 0.0380, -0.0374},
                {-0.0440,  0.0121},
                { 0.0433,  0.0081},
                { 0.0357, -0.0093},
                { 0.0429,  0.0034},
                { 0.0092, -0.0420},
                {-0.0221, -0.0174},
                { 0.0405,  0.0687},
                { 0.0067,  0.0227},
                { 0.0279, -0.0431},
                {-0.0163, -0.0457},
                { 0.0015, -0.0533},
                { 0.0036,  0.0210},
                { 0.0188, -0.0404},
                {-0.0432,  0.0115},
                {-0.0472,  0.0265},
                { 0.0142, -0.0499},
                { 0.0297, -0.0421},
                {-0.0432, -0.0103}
        };

        double[][] dat = swissroll.toArray(new double[swissroll.size()][]);
        double[][] data = new double[1000][];
        System.arraycopy(dat, 0, data, 0, data.length);

        LaplacianEigenmap laplacianEigenmap = new LaplacianEigenmap(data, 2, 7);

        double[][] coords = laplacianEigenmap.getCoordinates();
        for (int i = 0; i < points.length; i++) {
            for (int j = 0; j < points[0].length; j++) {
                assertEquals(Math.abs(points[i][j]), Math.abs(coords[i][j]), 1E-4);
            }
        }
    }
}

 

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