/*
* Copyright (c) 2012-2015, Peter Abeles. All Rights Reserved.
*
* This file is part of DDogleg (http://ddogleg.org).
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.ddogleg.clustering.kmeans;
import org.ddogleg.struct.GrowQueue_B;
import java.util.ArrayList;
import java.util.List;
import java.util.Random;
/**
* Seeds are selects by randomly picking points. This is the standard way to initialize k-means
*
* @author Peter Abeles
*/
public class InitializeStandard_F64 implements InitializeKMeans_F64 {
Random rand;
// used to ensure that the same point isn't returned twice
GrowQueue_B marked = new GrowQueue_B();
List unused = new ArrayList();
@Override
public void init(int pointDimension, long randomSeed) {
rand = new Random(randomSeed);
}
@Override
public void selectSeeds(List points, List seeds) {
if( seeds.size() > points.size() )
throw new IllegalArgumentException("More seeds requested than points!");
if( seeds.size()*2 > points.size() ) {
// If the probability of a collision is too great use a list which is modified
// this way each time a draw is made its going to not be used. However removing items
// from a list is an expensive opeartion
unused.addAll(points);
for (int i = 0; i < seeds.size(); i++) {
double[] s = seeds.get(i);
double[] p = unused.remove(rand.nextInt(unused.size()));
System.arraycopy(p, 0, s, 0, s.length);
}
unused.clear();
} else {
// mark which points have been used. If it draws the same one twice just do another random draw
marked.resize(points.size());
marked.fill(false);
int numSelected = 0;
while( numSelected < seeds.size() ) {
int drawn = rand.nextInt(points.size());
// see if has already been selected
if( marked.get(drawn))
continue;
marked.set(drawn,true);
double[] s = seeds.get(numSelected);
double[] p = points.get(drawn);
System.arraycopy(p, 0, s, 0, s.length);
numSelected++;
}
}
}
}
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